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@HUBioDataLab Hacettepe University Biological Data Science Laboratory

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    13 repositories

    • HoliLoc

      Public
      HoliLoc: Image, Sequence, and Interactome Based Prediction of Protein Subcellular Localization
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • CROssBAR-pypath

      Public
      Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
      Python
      •
      GNU General Public License v3.0
      •48•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • DeepResponse

      Public
      DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
      machine-learningdeep-learningconvolutional-neural-networkscancer-researchmulti-omicsgraph-neural-networksdrug-response-predictiongraph-transformer
      Python
      •3•1•0•0•Updated Oct 28, 2024Oct 28, 2024

    • Domain2GO

      Public
      A Python tool for predicting protein functions by associating domains with Gene Ontology terms using existing domain and GO annotation data
      protein-function-prediction
      Python
      •1•1•0•0•Updated Aug 12, 2024Aug 12, 2024

    • ASCARIS

      Public
      ASCARIS: Annotation & Structure-Based Representation of SAVs
      Python
      •3•2•0•0•Updated Jul 22, 2024Jul 22, 2024

    • SELFormer_back

      Public
      SELFormer: Molecular Representation Learning via SELFIES Language Models
      Python
      •3•4•0•0•Updated Jun 29, 2024Jun 29, 2024

    • ProtBENCH

      Public
      Python
      •
      GNU General Public License v3.0
      •3•11•0•0•Updated May 21, 2024May 21, 2024

    • TransPRSFP

      Public
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • CROssBARv1

      Public
      Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
      PHP
      •
      Other
      •11•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • DrugApp

      Public
      Python
      •
      GNU General Public License v3.0
      •1•8•0•0•Updated Dec 14, 2022Dec 14, 2022

    • awesome-denovo-papers

      Public
      Awesome De novo drugs design papers
      12•4•0•0•Updated Sep 6, 2022Sep 6, 2022

    • DRUIDom

      Public
      DRUIDom (DRUg Interacting Domains): a computational method for predicting new drug/compound - target protein interactions for drug discovery and repurposing, via mapping ligands to structural domains
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 6, 2021Dec 6, 2021

    • HPO2GO

      Public
      Mapping between HPO and GO terms
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 26, 2020Mar 26, 2020