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@HUBioDataLab

Hacettepe University Biological Data Science Laboratory

An academic research laboratory focusing on machine/deep learning applications in the fields of bioinformatics and cheminformatics

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  1. SELFormer SELFormer Public

    SELFormer: Molecular Representation Learning via SELFIES Language Models

    Python 88 17

  2. DrugGEN DrugGEN Public

    Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks

    Python 56 17

  3. ProtBENCH ProtBENCH Public

    Forked from hevalatas/ProtBENCH

    Python 11 2

  4. CROssBARv2 CROssBARv2 Public

    This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

    Python 8 7

  5. DrugApp DrugApp Public

    Forked from fulyaciray/DrugApp

    Python 8

  6. awesome-denovo-papers awesome-denovo-papers Public

    Forked from asarigun/awesome-denovo-papers

    Awesome De novo drugs design papers

    4

Repositories

Showing 10 of 26 repositories
  • DrugGEN Public

    Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks

    HUBioDataLab/DrugGEN’s past year of commit activity
    Python 56 GPL-3.0 17 4 0 Updated Mar 12, 2025
  • CROssBAR_LLM Public
    HUBioDataLab/CROssBAR_LLM’s past year of commit activity
    JavaScript 3 0 0 0 Updated Mar 11, 2025
  • ProtMamba Public
    HUBioDataLab/ProtMamba’s past year of commit activity
    Python 1 0 0 0 Updated Mar 10, 2025
  • CROssBARv2 Public

    This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

    HUBioDataLab/CROssBARv2’s past year of commit activity
    Python 8 7 1 0 Updated Mar 7, 2025
  • DEEPScreen2 Public

    Automated Tool for Drug-Target Interaction Prediction Using Deep Convolutional Neural Networks

    HUBioDataLab/DEEPScreen2’s past year of commit activity
    Python 1 GPL-3.0 3 0 4 Updated Mar 6, 2025
  • Prot2Mol Public

    Target based molecule generation using protein embeddings and SELFIES molecule representation

    HUBioDataLab/Prot2Mol’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Feb 25, 2025
  • ProtHGT Public

    A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models

    HUBioDataLab/ProtHGT’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Feb 6, 2025
  • HoliLoc Public Forked from ecemecemk/HoliLoc

    HoliLoc: Image, Sequence, and Interactome Based Prediction of Protein Subcellular Localization

    HUBioDataLab/HoliLoc’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jan 8, 2025
  • CROssBAR-pypath Public Forked from saezlab/pypath

    Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

    HUBioDataLab/CROssBAR-pypath’s past year of commit activity
    Python 0 GPL-3.0 49 0 0 Updated Jan 7, 2025
  • crossbar-graphql Public
    HUBioDataLab/crossbar-graphql’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Dec 12, 2024
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