Repositories list

• BakerLauerIsolatesPaper

  Public
  Figures and Data for the Isolates Paper

  R

  •1•0•0•0•Updated Dec 8, 2022Dec 8, 2022

• Computational-boot-camp

  Public
  4•1•0•0•Updated Jul 19, 2022Jul 19, 2022

• Sequencing_Analysis

  Public
  Analysis of 246 DNA extractions performed by Morgan Meade during the 2015-2016 academic year

  2•0•0•1•Updated Jan 11, 2022Jan 11, 2022

• Dereplication-Letter-Code

  Public
  Code used in the generation of figures and dereplicated sets of genomes.

  Jupyter Notebook

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  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 13, 2020Jul 13, 2020

• Diversity_Productivity

  Public
  Microhabitats associate with bacterial biodiversity-ecosystem function relationships

  HTML

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  MIT License

  •1•0•0•0•Updated Mar 16, 2020Mar 16, 2020

• HNA_LNA_productivity

  Public
  Investigate the bacterial composition of HNA and LNA groups and relate them to the productivity

  HTML

  •1•0•0•0•Updated May 22, 2019May 22, 2019

• Verruco

  Public
  Standard ML

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  GNU General Public License v2.0

  •1•0•0•0•Updated May 12, 2018May 12, 2018

• Mothur_oligo_batch

  Public
  Mothur batch analysis scripts

  R

  •7•1•0•0•Updated Dec 5, 2017Dec 5, 2017

• EnvMicro_Props2017

  Public
  HTML

  •2•1•0•0•Updated Oct 13, 2017Oct 13, 2017

• IDM_Experiments

  Public
  HTML

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  GNU General Public License v3.0

  •0•0•0•0•Updated May 8, 2017May 8, 2017

• microcystis-oligotypes

  Public
  Analysis for Berry et al. (2017) "Are oligotypes meaningful ecological and phylogenetic units? A case study of Microcystis in freshwater lakes"

  HTML

  •0•0•0•0•Updated Mar 2, 2017Mar 2, 2017

• chab-microbial-ecology

  Public
  Code repository for Berry et al. (2017), "Cyanobacterial harmful algal blooms are a biological disturbance to western Lake Erie bacterial communities"

  HTML

  •3•6•0•0•Updated Jan 16, 2017Jan 16, 2017

• MicrobeMiseq

  Public
  Set of useful functions and scripts for analyzing amplicon Miseq data.

  HTML

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  GNU General Public License v2.0

  •31•18•0•0•Updated Sep 27, 2016Sep 27, 2016

• EMIRGE

  Public
  Set of scripts/guidelines for EMIRGE analysis of metagenomic data

  R

  •1•3•1•0•Updated Sep 22, 2016Sep 22, 2016

• flux-tools

  Public
  Code and demos for running scripts on FLUX

  GNU General Public License v3.0

  •2•0•0•1•Updated Aug 23, 2016Aug 23, 2016

• LM13_DNA

  Public
  R

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  GNU General Public License v3.0

  •2•0•0•0•Updated May 19, 2016May 19, 2016

• Frontiers2016Denef

  Public
  iTag analyses for cDNA and DNA data generated from samples for 2013 Lake Michigan cruises

  R

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Apr 14, 2016Apr 14, 2016

• Final_PAFL_Trophicstate

  Public
  This is the repository for the manuscript "Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla" writt…

  HTML

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  MIT License

  •2•2•0•0•Updated Dec 8, 2015Dec 8, 2015