Repositories list

• PhyloGeoApes

  Public
  0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• MalAdapter

  Public
  Bash scripts for quantifying and removing adapter contamination from contigs and for reassembling cleaned contigs

  Shell

  •

  MIT License

  •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

• sn-mg-pipeline

  Public
  Snakemake pipeline for basic processing of metagenomic data from the lab

  Python

  •

  MIT License

  •7•2•7•0•Updated May 14, 2024May 14, 2024

• Moeller_Opentrons_protocol_library

  Public
  Python

  •

  MIT License

  •8•1•0•0•Updated Apr 11, 2024Apr 11, 2024

• Real_etal_2023_MUPKO

  Public
  Reproducibility data and code for Real et al 2023, "Altered gut microbiota in Mup-knockout house mice"

  Shell

  •0•0•0•0•Updated Dec 8, 2023Dec 8, 2023

• opentrons_functions

  Public
  A collection of functions compatible with the Opentrons API

  Python

  •

  MIT License

  •5•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• Labware

  Public
  G-code

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Sep 26, 2022Sep 26, 2022

• Sanders-etal-2022-analysis

  Public
  Analysis notebooks used in Sanders et al 2022

  Jupyter Notebook

  •1•0•0•0•Updated Jun 29, 2022Jun 29, 2022

• codiv-tools

  Public
  A toolkit for exploring host:microbe codiversification

  Python

  •

  MIT License

  •1•1•0•0•Updated Jun 3, 2022Jun 3, 2022

• lab_scripts

  Public
  general useful labs scripts

  MIT License

  •1•0•0•0•Updated Aug 7, 2021Aug 7, 2021

• Moeller_Lab_DB

  Public
  MIT License

  •1•1•5•0•Updated Jun 24, 2021Jun 24, 2021

• Houtz_etal_2021-NHP_microbiome

  Public
  Reproducibility data and code for Houtz et al 2021, "Predictable and host-species-specific humanization of gut microbiota in captive primates"

  Jupyter Notebook

  •

  MIT License

  •2•0•0•0•Updated Apr 1, 2021Apr 1, 2021

• Quinn_metagenomics_pipeline

  Public
  Stub workflow for a Snakemake metagenomics pipeline

  Python

  •

  MIT License

  •5•0•0•0•Updated Feb 8, 2021Feb 8, 2021