Research Group CAMMA

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36 repositories

SurgVLP
Public
Learning multi-modal representations by watching hundreds of surgical video lectures
Python
•2•36•4•0•Updated Oct 25, 2024Oct 25, 2024
SurgLatentGraph
Public
This repository contains the code associated with our 2023 TMI paper "Latent Graph Representations for Critical View of Safety Assessment" and our MICCAI 2023 paper "Encoding Surgical Videos as Spatiotemporal Graphs for Object and Anatomy-Driven Reasoning".
Python
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Other
•2•24•0•0•Updated Oct 22, 2024Oct 22, 2024
SSG-VQA
Public
SSG-VQA is a Visual Question Answering (VQA) dataset on laparoscopic videos providing diverse, geometrically grounded, unbiased and surgical action-oriented queries generated using scene graphs.
scene-graph vqa-dataset surgical-data-science
Python
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Other
•1•28•1•0•Updated Aug 29, 2024Aug 29, 2024
endogen
Public
Surgical Text-To-Image Generation
JavaScript
•0•0•0•0•Updated Aug 23, 2024Aug 23, 2024
surgical-imagen
Public
HTML
•0•4•0•0•Updated Jul 20, 2024Jul 20, 2024
surgicalimagen
Public
HTML
•0•0•0•0•Updated Jul 15, 2024Jul 15, 2024
DExTeR
Public
0•0•0•0•Updated Jul 9, 2024Jul 9, 2024
ScalingSurgicalSSL
Public
Official repository for "Jumpstarting Surgical Computer Vision"
Python
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Other
•9•1•0•0•Updated Jul 6, 2024Jul 6, 2024
SelfPose3d
Public
Official code for "SelfPose3d: Self-Supervised Multi-Person Multi-View 3d Pose Estimation"
human-pose-estimation multi-view-learning self-supervised-learning 3d-human-shape-and-pose-estimation multi-view-multi-person-3d-human-pose-estimation
Python
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Other
•3•29•6•0•Updated Jun 22, 2024Jun 22, 2024
MultiBypass140
Public
Python
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Other
•1•11•0•0•Updated Jun 8, 2024Jun 8, 2024
cholectrack20
Public
Python
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Other
•0•8•0•0•Updated May 31, 2024May 31, 2024
ivtmetrics
Public template
A Python evaluation metrics package for surgical action triplet recognition
recognition detection average-precision action-triplet python machine-learning metrics object-detection
Python
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BSD 2-Clause "Simplified" License
•2•13•0•0•Updated May 15, 2024May 15, 2024
med-moco
Public
Overcoming Dimensional Collapse in Self-supervised Contrastive Learning for Medical Image Segmentation
medical-imaging self-supervised-learning dimensional-collapse local-feature-learning
0•2•2•0•Updated Feb 19, 2024Feb 19, 2024
Endoscapes
Public
Official Repository for the Endoscapes Dataset for Surgical Scene Segmentation, Object Detection, and Critical View of Safety Assessment
Other
•1•33•1•0•Updated Dec 20, 2023Dec 20, 2023
mcit-ig
Public
Python
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Other
•0•2•2•0•Updated Oct 4, 2023Oct 4, 2023
rendezvous
Public
A transformer-inspired neural network for surgical action triplet recognition from laparoscopic videos.
python deep-learning tensorflow python3 pytorch transformer attention-mechanism action-recognition weakly-supervised-learning state-of-the-art
Python
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Other
•9•25•2•0•Updated Aug 30, 2023Aug 30, 2023
cholect50
Public
A repository for surgical action triplet dataset. Data are videos of laparoscopic cholecystectomy that have been annotated with <instrument, verb, target> labels for every surgical fine-grained activity.
python data machine-learning recognition localization deep-learning tensorflow detection pytorch artificial-intelligence
Python
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Other
•4•42•2•1•Updated Aug 7, 2023Aug 7, 2023
rendezvous-in-time
Public
rendezvous-in-time
Python
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Other
•3•8•2•0•Updated Jul 5, 2023Jul 5, 2023
SelfSupSurg
Public
Official repository for "Dissecting Self-Supervised Learning Methods for Surgical Computer Vision"
endoscopic-vision surgical-phase-recognition surgical-data-science surgical-scene-segmentation surgical-computer-vision laparascopic-cholecystectomy deep-learning semi-supervised-learning transfer-learning self-supervised-learning
Python
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Other
•9•33•3•0•Updated Jul 2, 2023Jul 2, 2023
indexity
Public
Indexity is a web-based tool designed for medical video annotation in surgical data science projects.
TypeScript
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BSD 3-Clause "New" or "Revised" License
•1•10•0•0•Updated Jun 27, 2023Jun 27, 2023
AI4surgery
Public
Short tutorial supplementing the Neural Networks and Deep Learning chapter from Artificial Intelligence in Surgery: An AI Primer for Surgical Practice designed to offer hands-on experience with artificial neural networks to surgeons with little to no coding experience.
deep-learning neural-network cholec-tinytools-dataset
Jupyter Notebook
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Other
•4•14•0•0•Updated Jun 23, 2023Jun 23, 2023
out-of-body-detector
Public
Application for classifying out-of-body images in endoscopic videos
Python
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Other
•1•5•0•0•Updated Jun 7, 2023Jun 7, 2023
tripnet
Public
action-recognition action-triplet deep-learning
Python
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Other
•3•16•2•0•Updated Mar 1, 2023Mar 1, 2023
attention-tripnet
Public
python attention-mechanism action-recognition action-triplet
Python
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Other
•1•9•0•0•Updated Mar 1, 2023Mar 1, 2023
cholect45
Public
Laparoscopic video dataset for surgical action triplet recognition
python tensorflow python3 pytorch tensorflow2 laparoscopy endoscopic-images cholect45 cholect50 action-triplet
Python
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Other
•2•38•0•0•Updated Feb 8, 2023Feb 8, 2023
cholectriplet2022
Public
CholecTriplet 2022 challenge on surgical action triplet detection
Jupyter Notebook
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MIT License
•3•11•0•0•Updated Jan 9, 2023Jan 9, 2023
.github
Public
0•0•0•0•Updated Dec 22, 2022Dec 22, 2022
TF-Cholec80
Public
Library packaging the Cholec80 dataset for easy handling with Tensorflow.
video dataset surgery
Jupyter Notebook
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Other
•6•26•3•1•Updated Dec 19, 2022Dec 19, 2022
HPE-AdaptOR
Public
Code for Unsupervised domain adaptation for clinician pose estimation and instance segmentation in the OR
Python
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Other
•0•4•1•0•Updated Jul 7, 2022Jul 7, 2022
ORPose-Color
Public
Inference demo for the MICCAI-2020 paper "Self-supervision on Unlabelled OR Data for Multi-person 2D/3D Human Pose Estimation"
colab knowledge-distillation data-disillation operating-room low-resolution-images human-pose-estimation
Python
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Other
•1•11•0•0•Updated May 19, 2022May 19, 2022