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@ARTbio ARTbio Bioinformatics facility at the IBPS

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    72 repositories

    • galaxyXpand

      Public
      Ansible Playbook for Galaxy server deployment
      Jinja
      •
      GNU General Public License v3.0
      •2•0•3•1•Updated Oct 9, 2024Oct 9, 2024

    • tools-artbio

      Public
      Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
      bioinformaticsbioinformatics-pipelinegalaxyartbio-platform
      Python
      •
      MIT License
      •15•12•7•3•Updated Sep 4, 2024Sep 4, 2024

    • ansible-galaxy-tools

      Public
      An Ansible role for automated installation of tools from a Tool Shed into Galaxy.
      Python
      •
      Other
      •0•0•0•0•Updated Jun 16, 2024Jun 16, 2024

    • startbio

      Public
      Training Material of the STARTbio program
      R
      •
      Creative Commons Attribution 4.0 International
      •1•4•0•0•Updated May 22, 2024May 22, 2024

    • usePsilo

      Public
      Public documentation and DMPs for Psilo
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Apr 7, 2024Apr 7, 2024

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •422•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • ansible-slurm

      Public
      Ansible role for installing and managing the Slurm Workload Manager
      Jinja
      •47•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • ansible-galaxy

      Public
      An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
      Jinja
      •75•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • AnalyseGenome

      Public
      A repository for the training material of the course "Analyse des Génomes"
      bioinformaticsgalaxy-project
      Shell
      •0•0•1•0•Updated Dec 3, 2023Dec 3, 2023

    • scRNAseq-analysis-notes

      Public
      scRNAseq analysis notes from Ming Tang
      MIT License
      •155•0•0•0•Updated May 2, 2023May 2, 2023

    • Run-Galaxy

      Public
      Run Galaxy training course https://artbio.github.io/startbio/Run-Galaxy/
      Shell
      •
      MIT License
      •0•0•2•0•Updated Apr 18, 2023Apr 18, 2023

    • GalaxyKickStart

      Public
      Ansible playbooks for Galaxy Server deployment
      ansibleansible-playbooksgalaxygalaxy-rolesgalaxy-server
      HTML
      •
      GNU General Public License v3.0
      •22•24•2•0•Updated Feb 23, 2023Feb 23, 2023

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •999•0•0•0•Updated Feb 4, 2023Feb 4, 2023

    • ansible-artbio-omero

      Public
      omero ansible setup
      MIT License
      •0•0•0•0•Updated Jan 27, 2023Jan 27, 2023

    • glioblastoma_senescence

      Public
      R scripts used for the analysis of senescence in "Cellular senescence in malignant cells promotes tumor progression in mouse and patient Glioblastoma", Salam, Saliou et al
      R
      •1•0•0•0•Updated Jan 11, 2023Jan 11, 2023

    • celebration

      Public
      Development repository for single-cell RNA-seq analysis codes and documentations
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • IFB-FAIR-data-training

      Public
      Support for the IFB training on FAIR data. Web site: https://ifb-elixirfr.github.io/IFB-FAIR-data-training/
      JavaScript
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • pandas-workshop

      Public
      An introductory workshop on pandas with notebooks and exercises for following along.
      HTML
      •
      MIT License
      •690•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • ephemeris

      Public
      Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
      Python
      •
      Other
      •38•0•0•0•Updated Oct 23, 2021Oct 23, 2021

    • ansible-galaxy-os

      Public
      An Ansible role is for configuring the base operating system useful for running Galaxy.
      MIT License
      •18•0•0•0•Updated Sep 14, 2021Sep 14, 2021

    • iwc

      Public
      Intergalactic Workflow Commission
      64•0•0•0•Updated Jun 18, 2021Jun 18, 2021

    • galaxytools

      Public
      🔬📚 Galaxy Tool wrappers
      HTML
      •229•0•0•0•Updated May 6, 2021May 6, 2021

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.2k•0•0•0•Updated May 6, 2021May 6, 2021

    • ansible-galaxy-extras

      Public
      Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
      Jinja
      •
      Other
      •40•0•0•0•Updated Apr 30, 2021Apr 30, 2021

    • ansible-postgresql-objects

      Public
      A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).
      12•0•0•0•Updated Apr 25, 2021Apr 25, 2021

    • Galaxy-E

      Public
      Towards a Galaxy for Ecology
      HTML
      •
      Other
      •11•0•0•0•Updated Apr 23, 2021Apr 23, 2021

    • ansible-miniconda-role

      Public
      ansible role to install miniconda, Python-agnostic binary package manager
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •17•0•0•0•Updated Apr 23, 2021Apr 23, 2021

    • ansible-trackster

      Public
      An Ansible role for setting up Trackster (somewhat tailored for use with Galaxy CloudMan).
      MIT License
      •2•0•0•0•Updated Apr 23, 2021Apr 23, 2021

    • jupyterhub

      Public
      Multi-user server for Jupyter notebooks
      Python
      •
      Other
      •2k•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • usegalaxy-playbook

      Public
      Ansible Playbook for usegalaxy.org
      Shell
      •
      Academic Free License v3.0
      •24•0•0•0•Updated Mar 11, 2021Mar 11, 2021