AIMed Lab @ OSU

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36 repositories

SubgroupTE
Public
Python
•1•0•0•0•Updated Nov 6, 2024Nov 6, 2024
KG-TREAT
Public
Python
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MIT License
•0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
CURE
Public
Python
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MIT License
•0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
PULSE
Public
The code, data, and models for "Teach Multimodal LLMs to Comprehend Electrocardiographic Images".
Python
•2•8•0•0•Updated Oct 28, 2024Oct 28, 2024
TRANS
Public
Official implementation for paper "Predictive Modeling with Temporal Graphical Representation on Electronic Health Records"
Python
•2•0•0•0•Updated Jun 5, 2024Jun 5, 2024
SepsisLab
Public
Python
•2•0•0•0•Updated Feb 18, 2024Feb 18, 2024
stable-prediction
Public
Python
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MIT License
•1•0•0•0•Updated Jan 24, 2024Jan 24, 2024
DREAM
Public
Python
•1•0•0•0•Updated Dec 4, 2023Dec 4, 2023
Drug_Similarity
Public
Python
•0•1•0•0•Updated Jul 7, 2023Jul 7, 2023
MultimodalPred
Public
Python
•4•1•0•0•Updated May 1, 2023May 1, 2023
T4
Public
Code for paper "Estimating Trustworthy Treatment Effects for Antibiotic Stewardship in Sepsis"
Python
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MIT License
•3•0•0•0•Updated Mar 6, 2023Mar 6, 2023
FATDM
Public
Fairness and Accuracy Transfer by Density Matching
Python
•1•0•0•0•Updated Feb 28, 2023Feb 28, 2023
IPTW-TBI
Public
R
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MIT License
•1•0•0•0•Updated Sep 8, 2022Sep 8, 2022
DeepDRiD
Public
Datasets for the paper "DeepDRiD: Diabetic Retinopathy—Grading and Image Quality Estimation Challenge", published on Patterns 2022.
deep-learning medical-imaging diabetic-retinopathy fundus-image deepdrid
Creative Commons Attribution Share Alike 4.0 International
•18•0•0•0•Updated May 21, 2022May 21, 2022
TAME
Public
Code and Datasets for the paper "Identifying Sepsis Subphenotypes via Time-Aware Multi-ModalAuto-Encoder", published on KDD 2020.
electronic-health-record auto-encoder sepsis data-imputation patient-subtyping
Python
•2•0•0•1•Updated May 9, 2022May 9, 2022
FAME
Public
Code for the paper "FAME: Fragment-based Conditional Molecular Generation for Phenotypic Drug Discovery", published on SDM 2022.
variational-autoencoder conditional-generation contrastive-learning molecular-generation phenotypic-drug-discovery chemical-induced-gene-expression
Python
•2•6•1•0•Updated Mar 16, 2022Mar 16, 2022
DAC
Public
Code and Datasets for the paper "Deconfounding actor-critic network with policy adaptation for dynamic treatment regimes", published on KDD 2022.
reinforcement-learning mimic-iii electronic-health-record mechanical-ventilation causal-reinforcement-learning actor-critic-model dynamic-treatment-regimens
Python
•3•0•0•0•Updated Feb 20, 2022Feb 20, 2022
CAT-LSTM
Public
Code and Datasets for the paper "Predicting Age-Related Macular Degeneration Progression with Contrastive Attention and Time-Aware LSTM", published on KDD 2022.
deep-learning amd medical-imaging fundus-image age-related-macular-degeneration patient-subtyping disease-progression-model
Python
•1•2•0•0•Updated Feb 18, 2022Feb 18, 2022
CIGER
Public
Code and Datasets for the paper "Chemical-induced gene expression ranking and its application to pancreatic cancer drug repurposing", published on Patterns in 2022.
deep-learning l1000 drug-repurposing learning-to-rank graph-neural-network chemical-induced-gene-expression
Python
•1•3•0•0•Updated Feb 14, 2022Feb 14, 2022
Age-Risk-Identification
Public
Code and Datasets for the paper "A Computational Framework for Identifying Age Risks in Drug-Adverse Event Pairs", published on AMIA 2022 Informatics Summit.
drug-safety pharmacovigilance faers adverse-drug-events
R
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MIT License
•0•1•0•0•Updated Jan 7, 2022Jan 7, 2022
MuViTaNet
Public
Code for the paper "Cardiac Complication Risk Profiling for Cancer Survivors via Multi-View Multi-Task Learning", published on ICDM 2021.
electronic-health-record multi-task-learning multi-view-learning risk-prediction cardiac-complication cancer-survivor
Python
•0•0•0•0•Updated Oct 1, 2021Oct 1, 2021
TC-EMNet
Public
Code for the paper "Temporal clustering with external memory network for disease progression modeling". Accepted by ICDM 2021.
electronic-health-record alzheimers-disease parkinsons-disease disease-progression-model disease-staging temporal-clustering
Python
•0•0•0•0•Updated Sep 29, 2021Sep 29, 2021
CCMDR
Public
Code for the paper "Clinical connectivity map for drug repurposing: using laboratory results to bridge drugs and diseases". Accepted by BMC Medical Informatics and Decision Making, 2021
drug-repurposing electronic-health-record real-world-evidence nhanes drug-repositioning
Python
•0•3•0•0•Updated Aug 1, 2021Aug 1, 2021
TransICD
Public
Code and Datasets for the paper "TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding", accepted by AIME 2021.
transformer clinical-notes interpretable-deep-learning icd-coding
Python
•1•5•0•0•Updated Mar 29, 2021Mar 29, 2021
BAGAU-Net
Public
Code and Datasets for the paper "Brain atlas guided attention u-net for white matter hyperintensity segmentation", published on AMIA 2021 Informatics Summit.
deep-learning mri medical-imaging magnetic-resonance-imaging u-net wmh-segmentation white-matter-hyperintensities cerebral-small-vessel-disease
Python
•0•6•1•0•Updated Oct 21, 2020Oct 21, 2020
ecg-diagnosis
Public
Code and Datasets for the paper "Interpretable deep learning for automatic diagnosis of 12-lead electrocardiogram", published on iScience in 2021.
interpretability cardiac-arrhythmia ecg electrocardiogram interpretable-deep-learning
Python
•2•13•1•0•Updated Oct 21, 2020Oct 21, 2020
DSW
Public
Code and Datasets for the paper "Estimating Individual Treatment Effects with Time-Varying Confounders", published on ICDM 2020.
deep-learning time-varying-confounding electronic-health-record causal-inference sepsis individual-treatment-effects deep-sequential-weighting
Python
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MIT License
•2•3•1•0•Updated Sep 5, 2020Sep 5, 2020
DGViz
Public
Code and Datasets for the paper "DG-Viz: Deep Visual Analytics with Domain Knowledge Guided Recurrent Neural Networks on Electronic Health Records", published on Journal of Medical Internet Research (JMIR) in 2020.
data-visualization electronic-health-record heart-failure interpretable-deep-learning
Python
•0•3•0•0•Updated Aug 21, 2020Aug 21, 2020
DeepCE
Public
Code and Datasets for the paper "A deep learning framework for high-throughput mechanism-driven phenotype compound screening and its application to COVID-19 drug repurposing", published on Nature Machine Intelligence in 2021.
l1000 drug-repurposing multi-head-attention graph-neural-network covid-19 phenotypic-drug-discovery chemical-induced-gene-expression
Python
•2•3•0•0•Updated Aug 16, 2020Aug 16, 2020
LP-SDA
Public
Code and Datasets for the paper "Towards early detection of adverse drug reactions: combining pre-clinical drug structures and post-market safety reports", published on BMC Medical Informatics and Decision Making in 2019.
signal-detection label-propagation pharmacovigilance adverse-drug-reaction faers
Python
•1•5•0•0•Updated Aug 16, 2020Aug 16, 2020