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System update can alter only the values of the matrix, not its pattern. Instead of coding our own check that enforces this condition, it is simpler and much cheaper to set the "MAT_NEW_NONZERO_LOCATIONS" PETSc option to false after the first matrix assembly. This ensures no new non-zero entries can be added during system updates.
This banche starts from "discretization.update.all", the commit that implements this optimization is the last one in the series.