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Fixed stay at home order coding
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@nabarunDG
nabarunDG committed Apr 22, 2020
1 parent 9374c0b commit 21fa805
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Showing 10 changed files with 1,251 additions and 1,098 deletions.
2,262 changes: 1,203 additions & 1,059 deletions .ipynb_checkpoints/locationcovid_exploratory-checkpoint.ipynb
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10 changes: 8 additions & 2 deletions data_formatting.do
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Expand Up @@ -13,7 +13,7 @@ import excel using "https://seer.cancer.gov/seerstat/variables/countyattribs/Rur
destring oldfips, g(temp)
gen fips=oldfips if temp>10000
replace fips="0"+oldfips if temp<10000
drop temp oldfips
drop temp oldfips C

destring rucc, force replace
save rucc, replace
Expand Down Expand Up @@ -212,7 +212,13 @@ import excel "2019_County_Health_Rankings_Data_v3.xls", sheet("Ranked Measure Da
by county: egen last3_m50=mean(m50) if weekdays >= lastweekday-2 & weekdays!=.
by county: egen last3_sample=total(samples) if weekdays >= lastweekday-2 & weekdays!=.
by county: egen last3_index=mean(m50_index) if weekdays >= lastweekday-2 & weekdays!=.


di "Samples from baseline period February 17 to March 7, 2020:"
qui: su samples if date>=mdy(2,17,2020) & date<= mdy(3,7,2020)
di r(sum)



collapse (max) last3_m50 last3_index last3_sample (sum) samples, by(fips county)

la var last3_m50 "Median km traveled (last 3 weekdays)"
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77 changes: 40 additions & 37 deletions locationcovid_exploratory.ipynb
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Expand Up @@ -40,14 +40,14 @@
},
{
"cell_type": "code",
"execution_count": 52,
"execution_count": 22,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Notebook generated on 21 Apr 2020 at 21:55:46 ET\n"
"Notebook generated on 22 Apr 2020 at 08:51:49 ET\n"
]
}
],
Expand All @@ -64,7 +64,7 @@
},
{
"cell_type": "code",
"execution_count": 53,
"execution_count": 23,
"metadata": {},
"outputs": [],
"source": [
Expand Down Expand Up @@ -170,7 +170,7 @@
},
{
"cell_type": "code",
"execution_count": 54,
"execution_count": 24,
"metadata": {},
"outputs": [
{
Expand All @@ -179,33 +179,33 @@
"text": [
"\n",
"\n",
" RUCC_2013 | Freq. Percent Cum.\n",
" rucc | Freq. Percent Cum.\n",
"------------+-----------------------------------\n",
" 1 | 342 16.12 16.12\n",
" 2 | 308 14.52 30.65\n",
" 3 | 275 12.97 43.61\n",
" 4 | 165 7.78 51.39\n",
" 5 | 74 3.49 54.88\n",
" 6 | 444 20.93 75.81\n",
" 7 | 321 15.13 90.95\n",
" 8 | 98 4.62 95.57\n",
" 1 | 345 16.27 16.27\n",
" 2 | 309 14.58 30.85\n",
" 3 | 273 12.88 43.73\n",
" 4 | 171 8.07 51.79\n",
" 5 | 76 3.58 55.38\n",
" 6 | 436 20.57 75.94\n",
" 7 | 322 15.19 91.13\n",
" 8 | 94 4.43 95.57\n",
" 9 | 94 4.43 100.00\n",
"------------+-----------------------------------\n",
" Total | 2,121 100.00\n",
" Total | 2,120 100.00\n",
"\n",
"\n",
"Distancing: |\n",
" Lowest (1) |\n",
" to Highest |\n",
" (5) | Freq. Percent Cum.\n",
"------------+-----------------------------------\n",
" 1 | 424 19.99 19.99\n",
" 2 | 424 19.99 39.98\n",
" 3 | 423 19.94 59.92\n",
" 4 | 421 19.85 79.77\n",
" 5 | 429 20.23 100.00\n",
" 1 | 421 19.86 19.86\n",
" 2 | 422 19.91 39.76\n",
" 3 | 423 19.95 59.72\n",
" 4 | 429 20.24 79.95\n",
" 5 | 425 20.05 100.00\n",
"------------+-----------------------------------\n",
" Total | 2,121 100.00\n",
" Total | 2,120 100.00\n",
"\n",
"\n",
"-------------------------\n",
Expand All @@ -215,41 +215,41 @@
"Highest |\n",
"(5) | sum(last3_~e)\n",
"----------+--------------\n",
" 1 | 1040479\n",
" 2 | 1481200\n",
" 3 | 2215266\n",
" 4 | 2649145\n",
" 5 | 6218575\n",
" 1 | 997370\n",
" 2 | 1442412\n",
" 3 | 2242183\n",
" 4 | 2907797\n",
" 5 | 5823421\n",
"-------------------------\n",
"\n",
"\n",
" Variable | Obs Mean Std. Dev. Min Max\n",
"-------------+---------------------------------------------------------\n",
"last3_sample | 2,121 6414.269 15083.38 101 285845\n",
"last3_sample | 2,120 6326.973 14928.19 101 285845\n",
"\n",
"Total 3-day mobile traces: 13604665\n",
"Total 3-day mobile traces: 13413183\n",
"\n",
"\n",
"\n",
"scalars:\n",
" r(N) = 2121\n",
" r(sum_w) = 2121\n",
" r(mean) = 42.09311648764907\n",
" r(Var) = 559.3349218681501\n",
" r(sd) = 23.65026261731886\n",
" r(N) = 2120\n",
" r(sum_w) = 2120\n",
" r(mean) = 42.10385226161694\n",
" r(Var) = 556.9398589649319\n",
" r(sd) = 23.59957327929748\n",
" r(min) = 0\n",
" r(max) = 378.3333435058594\n",
" r(sum) = 89279.50007030368\n",
" r(sum) = 89260.1667946279\n",
"\n",
"invalid 'format' \n"
"variable last3_samples not found\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"r(198);\n",
"r(198);\n"
"r(111);\n",
"r(111);\n"
]
},
{
Expand All @@ -276,7 +276,10 @@
" return list\n",
"\n",
"* Mean mobility change by quintile\n",
"table iso5, c(count last3_index mean last3_index sem last3_index sum samples), format(%10.0g) \n",
"table iso5, c(count last3_index mean last3_index sem last3_index sum samples median last3_sample) \n",
"\n",
"* Mean mobility change by status of homeorder\n",
"table homeorder, c(mean last3_index sem last3_index)\n",
"\n",
"* Rurality/urbanicity by quintile\n",
"table iso5, c(median rucc)"
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