fix yuma3 inactive neurons bonds computation

[andreea-popescu-reef]

Description

fix yuma3 bonds calculation so that it takes into account inactive neurons. This is done by computing bonds based on weights set to 0 for inactive neurons.

Type of Change

• Bug fix (non-breaking change which fixes an issue)

Checklist

• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have run cargo fmt and cargo clippy to ensure my code is formatted and linted correctly
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published in downstream modules

[andreea-popescu-reef]

rebased and fixed