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Update nf-openproblems to v1.10 (#815)
* use v1.10 benchmark * just pull the images * update full benchmark to v1.10
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.github/workflows/run_tests.yml

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@@ -69,6 +69,17 @@ jobs:
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pip install --editable .[evaluate]
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python -c "import openproblems"
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- name: Pull Docker images
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if: |
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(
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startsWith(github.ref, 'refs/heads/test_benchmark') ||
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startsWith(github.ref, 'refs/heads/test_full_benchmark')
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)
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run: |
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cd workflow
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snakemake -j $(nproc) docker_pull
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cd ..
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- name: Update Docker images
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if: |
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!(
@@ -505,13 +516,15 @@ jobs:
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env:
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TOWER_WATCH_URL: https://tower.nf/orgs/openproblems-bio/workspaces/openproblems-bio/watch
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TOWER_WORKSPACE_ID: 53907369739130
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TOWER_TEST_ACTION_ID: "6yMzmbRXXDZMoVqVkEozQo"
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TOWER_FULL_ACTION_ID: "6znCmebL2EBgWJTQz0H7pz"
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BRANCH: ${{ needs.setup_benchmark.outputs.branch }}
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run: |
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if [[ ${{ startsWith(github.ref, 'refs/tags') || startsWith(github.ref, 'refs/heads/test_full_benchmark') }} == true ]]; then
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TOWER_ACTION_ID="bVQhVSNah1JmJfnKkfyjg"
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TOWER_ACTION_ID="${TOWER_FULL_ACTION_ID}"
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WORKDIR="s3://openproblems-nextflow/work_main"
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else
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TOWER_ACTION_ID="5BQc88ZvjuXCYbc55Hot27"
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TOWER_ACTION_ID="${TOWER_TEST_ACTION_ID}"
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WORKDIR="s3://openproblems-nextflow/work/${BRANCH}"
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fi
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generate_parameters()

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