Design function dependencies #83
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| --- | |
| name: Check 🛠 | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - ready_for_review | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| audit: | |
| name: Audit Dependencies 🕵️♂️ | |
| uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main | |
| r-cmd: | |
| name: R CMD Check 🧬 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main | |
| secrets: | |
| REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| enable-staged-dependencies-check: false | |
| coverage: | |
| if: github.event_name == 'pull_request' | |
| name: Coverage 📔 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main | |
| secrets: | |
| REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| roxygen: | |
| name: Roxygen 🅾 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main | |
| secrets: | |
| REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| gitleaks: | |
| name: gitleaks 💧 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main | |
| links: | |
| if: github.event_name == 'pull_request' | |
| name: Check URLs 🌐 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/links.yaml@main | |
| version: | |
| name: Version Check 🏁 | |
| uses: insightsengineering/r.pkg.template/.github/workflows/version.yaml@main | |
| e2e-test: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{ matrix.config.image }}:${{ matrix.config.tag }} | |
| name: E2E Test on ${{ matrix.config.image }}:${{ matrix.config.tag }} | |
| if: > | |
| !contains(github.event.commits[0].message, '[skip e2e tests]') | |
| && github.event.pull_request.draft == false | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {image: ghcr.io/insightsengineering/rstudio_4.2.1_bioc_3.15, tag: latest} | |
| steps: | |
| - name: Install package | |
| run: > | |
| remotes::install_github( | |
| "${{ github.repository }}", | |
| ref = "${{ github.sha }}", | |
| auth_token = "${{ github.token }}" | |
| ) | |
| shell: Rscript {0} | |
| - name: Execute E2E Test | |
| run: | | |
| library(staged.dependencies) | |
| print("Creating dependency table") | |
| x <- dependency_table("openpharma/stageddeps.food", "repo@host", ref = "fixgarden@main") | |
| print(x) | |
| print("Checking consistent yamls") | |
| check_yamls_consistent(x) | |
| print("Install upstream deps") | |
| install_deps(x) | |
| print("Checking downstream") | |
| check_downstream(x, check_args = "--no-manual") | |
| print("Build, check, install") | |
| build_check_install(x, packages_to_process = "stageddeps.house", rcmd_args = list(check = "--no-manual")) | |
| print("Get all external dependencies") | |
| deps <- get_all_external_dependencies(x) | |
| print(deps) | |
| shell: Rscript {0} |