-
Notifications
You must be signed in to change notification settings - Fork 321
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Update to SBML 5.16 #1054
Update to SBML 5.16 #1054
Conversation
Codecov Report
@@ Coverage Diff @@
## develop #1054 +/- ##
===========================================
+ Coverage 41.76% 41.81% +0.04%
===========================================
Files 809 764 -45
Lines 59216 56480 -2736
===========================================
- Hits 24730 23615 -1115
+ Misses 34486 32865 -1621
Continue to review full report at Codecov.
|
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
May you change the permissions to 644?
src/base/io/writeCbModel.m
Outdated
else | ||
if strcmp(format,'toselect') % no format was given. try to detect from fileName. | ||
[~, ~, extension] = fileparts(fileName); | ||
switch extension |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
May you put this switch
in an internal function?
initCobraToolbox.m
Outdated
end | ||
|
||
|
||
function adaptMacPath() |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
May you put this function as a separate function in base
?
Thanks for the comments. Is this what you wanted? |
So all tests pass, but codecov fails and thus the default? |
Close/Reopen to retrigger the CI |
Update to SBML 5.16
This update includes:
Corrected IO for subSystems (they are now exported via the groups plugin - in accordance with BiGG models). They can now also be read from those.
Fixed issues with macOS high Sierra/Sierra and current Matlab versions.
SBML IO should work now with all current Matlab/macOS combinations indicated by mathworks.
I hereby confirm that I have:
develop
as a target branch (top left drop-down menu)(Note: You may replace [] with [X] to check the box)