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do not use cvode for stochastic models #24

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Merged
merged 2 commits into from
Jun 19, 2025
Merged

do not use cvode for stochastic models #24

merged 2 commits into from
Jun 19, 2025

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AurelienJaquier
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@AurelienJaquier AurelienJaquier self-assigned this Jun 18, 2025
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codecov bot commented Jun 18, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Files with missing lines Coverage Δ
bluecellulab/analysis/inject_sequence.py 97.91% <100.00%> (+0.06%) ⬆️

... and 3 files with indirect coverage changes

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@AurelienJaquier AurelienJaquier requested a review from ilkilic June 19, 2025 07:13
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I am using template_accepts_cvode here, but this code is not resilient if unexpected stochastic ion channel are used. We can use it for now because we only have StochKv* stochastic ion channel in the platform, but we should maybe think of a better solution.

@AurelienJaquier AurelienJaquier merged commit df54c5d into main Jun 19, 2025
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@AurelienJaquier AurelienJaquier deleted the stoch branch June 19, 2025 07:34
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