sed-Script for Adios Check

[michaelsippel]

Convert checkOpenPMD_h5.py with sed for adios.

[ax3l]

:D

[ax3l]

solves #1

[ax3l]

runtime checks: to do on the ADIOS numpy wrapper side:

• f.attrs["openPMD"] vs ["/openPMD"] base attributes not the same Numpy: Root Path Attributes ornladios/ADIOS#78

[WARN] Invalid read method name: r . Use default BP method
Error: Attribute openPMD (required) does NOT exist in `simDataAdios_0.bp`!
[...]

• attribute type checks fail in test_attr

[WARN] Invalid read method name: r . Use default BP method
Error: Attribute /openPMD in `simDataAdios_0.bp` is not of type '<map object at 0x7ff1a1c5b6a0>' (is 'attr')!
[...]

• attributes need .value access to get ndarray and are currently always ndarray even for scalars Numpy: Scalar Attributes ornladios/ADIOS#79
• string are falsely declared as vlen strings (np.str) instead of np.string_
• uint32, unt64 types vs unprecise "long", "float", ... types
• groups have no ".name" attribute and the File objects .name does not point to root / but gives the file name... (which should be f.filename instead)
• groups do list all .keys() recursively instead of only lusting the next level Numpy: Group .keys() Attribute ornladios/ADIOS#72

[ax3l]

's/, "r"//g'

[ax3l]

we keep PR for reference but changed the branch for now.
Also, there will be/is a new ADIOS2 Python API that we can use.