OG-957. Fix pandas import and add check if agingMechanism exists for gene #123
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Anthony1128
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Feb 6, 2023
const8ine
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Mar 31, 2023
* Changed api/gene/symbols output format and updated documentation * Removed relevant print() * fix: for Russian locale return lang_en if lang_ru column is empty * OG-936: fix empty response for measurementMethod field * Add updated datasets with missing experiments (#107) * New datasets with studies that were not added * Correct dataset for blue form * Correct dataset for pink form * Rename new datasets * Change the names of the datasets * Update dataset with missing experiments * Noissue. Do not change timestamp when gene was created * Noissue. Don't perform delete in longevity associations script since now * Noissue. Update confidence_level.tsv dataset * Updated first query assignment to avoid duplicates * OG-943: Change logic and refactor code * Fix query causing duplicated items in response (#108) * Noissue. Fix query causing duplicated items in response * Added join in _form, changed filter behavior, deleted a test router * Update README.md * #115. Remove GROUP BY * OG-943. Revert and fix script, update dataset, fix output (#112) * Revert OG-943 * Bring back changes from OG-391, add check for existing mechanism * OG-943. Fix script output, add comments * Update Hallmarks of Aging and Go-terms in a dataset * OG-943. Fix query where value were instead of id * OG-943. Fix. Only select the result with an identical GO-term name * OG-943. Fix. Consider GO-term children in SQL query for endpoint * Noissue. Update hallmarks dataset * Add info about DB dump * OG-949. Output manually bound aging mechanisms (#119) * Altered AgingMechanisms filter in GeneCommon, GeneSearchInput * Altered fields for AgingMechanism model, added filter for additional UUIDs (in str format) * Altered AgingMechanisms filter in GeneCommon, GeneSearchInput * Altered fields for AgingMechanism model, added filter for additional UUIDs (in str format) * Updated agingMechanisms SQL request, added @lang@ in proteinClasses * Updated gene/search endpoint: avoid duplicates in agingMechanisms response * Removed duplicates from aginMechanism response in gene/{id_or_symbol}, added sorting --------- Co-authored-by: psnewbee <savlovp@mail.ru> Co-authored-by: Pavel <107579370+psnewbee@users.noreply.github.com> * OG-957. Fix filter byConservativeIn (#121) * Created presenters/taxon.py, added TaxonDAO * Added TaxonDAO * Created gene/taxon endpoint * OG-957. Fix pandas import and add check if agingMechanism exists for gene (#123) --------- Co-authored-by: psnewbee <savlovp@mail.ru> Co-authored-by: anthony <antonwowis@yandex.ru> Co-authored-by: Pavel <107579370+psnewbee@users.noreply.github.com>
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