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@mtbc mtbc commented Feb 15, 2013

This is something of a mixed bag and requires ome/bioformats#374 to work. Major themes are:

  • Josh's fix for adjusting permissions, enabling
    • change template path to have import set ID (actually timestamp) not at top level
  • import through ImportLibrary fixes paths (so import from Windows to Unix is improved)
  • the temp file manager is used by unit tests
  • BioFormats is consulted on how many parent directories of a path to retain
  • general cleanup of messy code.

mtbc and others added 5 commits February 15, 2013 13:58
The decision was to maintain a top-level user directory
which has special permission handling. The directory
(of the form `%name%_%id%`) will be placed in the "user"
group so that it is visible from all queries.

NB: This does not yet fix the rest of the code that assumes
writing to the top directory is permissible!
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mtbc commented Feb 16, 2013

I don't like that bit of debugging I mentioned that catches that exception. Will close this PR and test some more in case that debug statement is catching something still triggerable that I needed to come back to and fix, and open a PR once I've checked things are okay. Anyone else wanting to test too can still merge my branch locally.

@mtbc mtbc closed this Feb 16, 2013
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mtbc commented Feb 18, 2013

Superseded by #756

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2 participants