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Batch_Image_Export handles OME-TIFF better. See #8791 #11

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Merged
joshmoore merged 1 commit into from
Nov 15, 2012
Merged

Batch_Image_Export handles OME-TIFF better. See #8791 #11

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10 changes: 8 additions & 2 deletions omero/export_scripts/Batch_Image_Export.py
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Original file line number Diff line number Diff line change
Expand Up @@ -383,16 +383,22 @@ def getTrange(sizeT, scriptParams):

# zip everything up (unless we've only got a single ome-tiff)
if format == 'OME-TIFF' and len(os.listdir(exp_dir)) == 1:
ometiffIds = [t.id for t in parent.listAnnotations(ns=omero.constants.namespaces.NSOMETIFF)]
print "Deleting OLD ome-tiffs: %s" % ometiffIds
conn.deleteObjects("Annotation", ometiffIds)
export_file = os.path.join(folder_name, os.listdir(exp_dir)[0])
namespace = omero.constants.namespaces.NSOMETIFF
outputDisplayName = "OME-TIFF"
mimetype = 'image/tiff'
else:
export_file = "%s.zip" % folder_name
compress(export_file, folder_name)
mimetype='application/zip'
outputDisplayName = "Batch export zip"
namespace = omero.constants.namespaces.NSCREATED+"/omero/export_scripts/Batch_Image_Export"

namespace = omero.constants.namespaces.NSCREATED+"/omero/export_scripts/Batch_Image_Export"
fileAnnotation, annMessage = script_utils.createLinkFileAnnotation(conn, export_file, parent,
output="Batch export zip", ns=namespace, mimetype=mimetype)
output=outputDisplayName, ns=namespace, mimetype=mimetype)
message += annMessage
return fileAnnotation, message

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