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Merged
joshmoore merged 3 commits into from
Nov 27, 2012
Merged

Broken links #244

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ee83c15
Fixing broken links
qidane Nov 20, 2012
1c5c63e
More link fixes
qidane Nov 20, 2012
cdc2b85
Fixing wording on endrov link
qidane Nov 23, 2012
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10 changes: 6 additions & 4 deletions docs/sphinx/formats/bitplane-imaris.txt
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Expand Up @@ -55,12 +55,14 @@ Utility: |Fair|
Additional Information
----------------------

Source Code: :source:`ImarisReader, ImarisTiffReader, ImarisHDFReader.java <components/bio-formats/src/loci/formats/in/ImarisReader, ImarisTiffReader, ImarisHDFReader.java >`
Source Code: :source:`ImarisReader.java <components/bio-formats/src/loci/formats/in/ImarisReader.java>`,
:source:`ImarisTiffReader.java <components/bio-formats/src/loci/formats/in/ImarisTiffReader.java>`,
:source:`ImarisHDFReader.java <components/bio-formats/src/loci/formats/in/ImarisHDFReader.java>`

Notes:


- There are three distinct Imaris formats:
#. the old binary format (introduced in Imaris version 2.7)
#. Imaris 3, a TIFF variant (introduced in Imaris version 3.0)
#. Imaris 5.5, an HDF variant (introduced in Imaris version 5.5)
#. the old binary format (introduced in Imaris version 2.7)
#. Imaris 3, a TIFF variant (introduced in Imaris version 3.0)
#. Imaris 5.5, an HDF variant (introduced in Imaris version 5.5)
2 changes: 1 addition & 1 deletion docs/sphinx/formats/leica-lif.txt
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Expand Up @@ -23,7 +23,7 @@ Supported Metadata Fields:

Freely Available Software:

- `Leica LAS AF Lite <ftp://ftp.llt.de/softlib/LAS_AF_Lite/1.7.0_build_1111/setup.exe>`_
- `Leica LAS AF Lite <http://www.leica-microsystems.com/products/microscope-software/life-sciences/las-af-advanced-fluorescence/>`_ (links at bottom of page)

Sample Datasets:

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2 changes: 1 addition & 1 deletion docs/sphinx/users/endrov.txt
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@@ -1,7 +1,7 @@
Endrov
======

`Endrov <http://www.endrov.net/>`_ (EV) is a multi-purpose image
`Endrov <https://github.com/mahogny/Endrov>`_ (or http://www.endrov.net) (EV) is a multi-purpose image
analysis program developed by the `Thomas Burglin
group <http://www.biosci.ki.se/groups/tbu>`_ at `Karolinska
Institute <http://www.ki.se/>`_, Department of Biosciences and
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4 changes: 2 additions & 2 deletions docs/sphinx/users/jar2lib.txt
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Expand Up @@ -12,8 +12,8 @@ version of the Bio-Formats libraries and demonstrating a general file
structure for projects to be wrapped.

The cpp-wrap project, used in
`Wiscscan, <http://dev.loci.wisc.edu/trac/internal/browser/trunk/WiscScan>`_
also provides a practical demonstration for Jar2Lib.  Cpp-wrap takes
`Wiscscan <http://loci.wisc.edu/software/wiscscan>`_, also provides a
practical demonstration for Jar2Lib.  Cpp-wrap takes
advantage of the Maven plug-in infrastructure to grant users the ability
to easy convert a Java library to C++ using Jar2Lib, without requiring
any knowledge of Jar2Lib's workings or syntax.