Merge pull request #111 from oloapinivad/cleaning-diagnostic #361
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies using Mamba, | |
| # run tests and lint with a single version of Python | |
| name: mamba-test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 2 * * 1" #run every Monday night at 2AM UTC | |
| permissions: | |
| contents: read | |
| jobs: | |
| mamba-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| #python-version: ["3.11"] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: provision-with-micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: ecmean | |
| cache-downloads: true | |
| cache-environment: false | |
| post-cleanup: environment | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install Flake8 | |
| run: | | |
| python -m pip install flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude=__init__.py | |
| - name: Install Pytest | |
| run: | | |
| python -m pip install pytest | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| coverage: | |
| needs: mamba-test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: provision-with-micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: ecmean | |
| cache-downloads: true | |
| cache-environment: true | |
| - name: Install Coverage | |
| run: | | |
| python -m pip install pytest coverage coveralls | |
| - name: Run coverage | |
| run: | | |
| coverage run -m pytest | |
| coverage combine | |
| coverage lcov | |
| - name: Run coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: coverage.lcov |