Commits

Breadcrumbs

History for

onr1.4

User selector

All users

Datepicker

All time

Commit History

Commits on Jun 1, 2022

• Update to v1.4.0 in DeepVariant documentations.

  Show description for 3d738f2
  

  pichuan

  authored and

  copybara-github

  committed
  3d738f2

  Copy full SHA for 3d738f2

Commits on Dec 10, 2021

• Our list of external solutions is out of date and not as easy to maintain. Remove for now.

  Show description for a01f1e6
  

  pichuan

  authored and

  copybara-github

  committed
  a01f1e6

  Copy full SHA for a01f1e6

Commits on Dec 9, 2021

• Updating documents for 1.3 release.

  Show description for bf65712
  

  pichuan

  authored and

  copybara-github

  committed
  bf65712

  Copy full SHA for bf65712

Commits on Sep 9, 2021

• Remove trailing slash.

  Show description for 87a228f
  

  danielecook

  authored and

  copybara-github

  committed
  87a228f

  Copy full SHA for 87a228f

Commits on Jul 29, 2021

• Update version.

  Show description for 14b690d
  

  pichuan

  authored and

  copybara-github

  committed
  14b690d

  Copy full SHA for 14b690d

Commits on Jul 25, 2021

• Update Quick Starts.

  Show description for 51bab7e
  

  pichuan

  authored and

  copybara-github

  committed
  51bab7e

  Copy full SHA for 51bab7e

Commits on Mar 15, 2021

• Add --pass-only to all hap.py evaluation for DeepVariant and DeepTrio.

  Show description for 16856fc
  

  pichuan

  authored and

  copybara-github

  committed
  16856fc

  Copy full SHA for 16856fc

Commits on Mar 10, 2021

• Update DeepVariant documentations to be using the v4.2.1 truth , and hap.py from jmcdani20/hap.py:v0.3.12.

  Show description for f2f8147
  

  pichuan

  authored and

  copybara-github

  committed
  f2f8147

  Copy full SHA for f2f8147

Commits on Mar 9, 2021

• Update hap.py to use jmcdani20/hap.py:v0.3.12

  Show description for 650f4c7
  

  pichuan

  authored and

  copybara-github

  committed
  650f4c7

  Copy full SHA for 650f4c7

Commits on Feb 9, 2021

• Add documentation for the new --dry_run flag for run_deepvariant and run_deeptrio.

  Show description for 84e451f
  

  pichuan

  authored and

  copybara-github

  committed
  84e451f

  Copy full SHA for 84e451f

Commits on Dec 4, 2020

• Change 1.0.0 version to 1.1.0

  Show description for a9d2591
  

  akolesnikov

  authored and

  copybara-github

  committed
  a9d2591

  Copy full SHA for a9d2591

Commits on Sep 3, 2020

• Add hybrid to list of sequencing technologies in README.

  Show description for d536291
  

  MariaNattestad

  authored and

  copybara-github

  committed
  d536291

  Copy full SHA for d536291

Commits on Sep 1, 2020

• Update WES case study and Quick Start.

  Show description for 5105fb4
  

  pichuan

  authored and

  copybara-github

  committed
  5105fb4

  Copy full SHA for 5105fb4

Commits on Aug 5, 2020

• Update WGS and WES case studies.

  Show description for 39e4300
  

  pichuan

  authored and

  copybara-github

  committed
  39e4300

  Copy full SHA for 39e4300

Commits on Jul 17, 2020

• Update Quick Start. Update the install_nvidia_docker.sh script.

  Show description for 6723c8c
  

  pichuan

  authored and

  copybara-github

  committed
  6723c8c

  Copy full SHA for 6723c8c

Commits on Jun 18, 2020

• Add documentation for show_examples.

  Show description for 08f9838
  

  MariaNattestad

  authored and

  copybara-github

  committed
  08f9838

  Copy full SHA for 08f9838

Commits on Mar 23, 2020

• 1. Update training case study to use v0.10.0 and simplify the doc.

  Show description for 51d4463
  

  pichuan

  authored and

  copybara-github

  committed
  51d4463

  Copy full SHA for 51d4463

Commits on Mar 20, 2020

• Update documentations to v0.10.0.

  Show description for f7955ff
  

  pichuan

  authored and

  copybara-github

  committed
  f7955ff

  Copy full SHA for f7955ff

Commits on Dec 16, 2019

• Update quickstart to mention that AVX instructions are needed for running the Docker image, based on feedback in google#248.

  Show description for 3bad5b5
  

  gunjanbaid

  authored and

  copybara-github

  committed
  3bad5b5

  Copy full SHA for 3bad5b5

Commits on Nov 13, 2019

• Update all r0.8 references to r0.9 in documentation

  Show description for 4c9a265
  

  sgoe1

  authored and

  copybara-github

  committed
  4c9a265

  Copy full SHA for 4c9a265

Commits on Nov 12, 2019

• Case-study documentation updates for v0.9.0 release

  Show description for 3c74e88
  

  sgoe1

  authored and

  copybara-github

  committed
  3c74e88

  Copy full SHA for 3c74e88

Commits on Oct 28, 2019

• A few updates to the documentation, including fixing links, update references, etc.

  Show description for caa96f4
  

  pichuan

  authored and

  copybara-github

  committed
  caa96f4

  Copy full SHA for caa96f4

Commits on Oct 2, 2019

• Turn VCF stats report on by default.

  Show description for e8a97b6
  

  MariaNattestad

  authored and

  copybara-github

  committed
  e8a97b6

  Copy full SHA for e8a97b6

Commits on Sep 18, 2019

• Internal changes.

  Show description for bb8db44
  cmclean

  committed
  bb8db44

  Copy full SHA for bb8db44

Commits on Aug 16, 2019

• Expose two ways to run the new VCF stats report.

  Show description for b98cfdd
  

  MariaNattestad

  authored and

  copybara-github

  committed
  b98cfdd

  Copy full SHA for b98cfdd

Commits on Jul 26, 2019

• Improve documentation.

  Show description for 53a5019
  

  pichuan

  authored and

  copybara-github

  committed
  53a5019

  Copy full SHA for 53a5019

Commits on Apr 30, 2019

• Update all gcr.io references to new Docker Hub location.

  Show description for b3ada68
  

  pichuan

  authored and

  copybara-github

  committed
  b3ada68

  Copy full SHA for b3ada68

Commits on Apr 19, 2019

• Update an incorrect script reference, and add explicit mention for model_type and num_shards so our users won't miss them!

  Show description for acf8647
  

  pichuan

  authored and

  copybara-github

  committed
  acf8647

  Copy full SHA for acf8647

Commits on Apr 11, 2019

• Update case studies and quickstart doc.

  Show description for aff131a
  

  gunjanbaid

  authored and

  Copybara-Service

  committed
  aff131a

  Copy full SHA for aff131a

Commits on Apr 1, 2019

• Extend the entrypoint script to use GNU parallel. Add two optional flags:

  Show description for 68f951d
  

  pichuan

  authored and

  Copybara-Service

  committed
  68f951d

  Copy full SHA for 68f951d

Commits on Dec 12, 2018

• Case study document updates for v0.7.2 release.

  Show description for f797049
  

  akolesnikov

  authored and

  Copybara-Service

  committed
  f797049

  Copy full SHA for f797049

Commits on Nov 17, 2018

• Fixes to DeepVariant docs (update links that don't work anymore); Move training data stats to the same doc as the training data details.

  Show description for d7436ae
  

  pichuan

  authored and

  Copybara-Service

  committed
  d7436ae

  Copy full SHA for d7436ae

Commits on Nov 5, 2018

• (1) Update binary version to 0.7.1. Re-run all case studies and updated information.

  Show description for 3e0e081
  

  pichuan

  authored and

  Copybara-Service

  committed
  3e0e081

  Copy full SHA for 3e0e081

Commits on Oct 10, 2018

• Move all of WGS case study into one script and simplify the Case Study instructions. Remove the use of gsutil in the instructions and replace with aria2 or wget with public URLs.

  Show description for 3f632c3
  

  pichuan

  authored and

  Copybara-Service

  committed
  3f632c3

  Copy full SHA for 3f632c3

Commits on Aug 24, 2018

• Based on the feedback in google#87 (comment) , check typos in all docs.

  Show description for ac33db4
  

  pichuan

  authored and

  Copybara-Service

  committed
  ac33db4

  Copy full SHA for ac33db4

Pagination

Previous

Next