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Commits on Jun 21, 2018

• Start a training tutorial. First: make_examples and shuffle.

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  pichuan

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Commits on Jun 19, 2018

• Update typo of the name of GIAB.

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  pichuan

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Commits on May 1, 2018

• Update binary version for v0.6.1 fixes.

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  pichuan

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Commits on Apr 5, 2018

• 0.6.0 release document updates.

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Commits on Mar 24, 2018

• Update the hap.py evaluation to use --engine=vcfeval and update the accuracy numbers accordingly.

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  pichuan

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Commits on Feb 9, 2018

• Update example commands and results for the DV 0.5.1 release.

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  cmclean

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Commits on Jan 30, 2018

• Update the numbers for DeepVariant 0.5.0 release.

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  pichuan

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Commits on Jan 28, 2018

• Add a few links back to the managed pipeline execution of DeepVariant available on Google Cloud Platform.

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Commits on Jan 26, 2018

• Make it clear in the case studies that the runtime numbers we are quoting are for a single machine use case.

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  rpoplin

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Commits on Jan 23, 2018

• Update the WGS case study to use the newer (v3.3.2) truth VCF and BED and update the numbers.

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  pichuan

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Commits on Jan 4, 2018

• Update all hap.py command lines to use --preprocess-truth

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  Genomics team in Google Brain

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Commits on Dec 14, 2017

• access -> assess

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  rpoplin

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• Update the documentation to make it clear that Google Cloud is not required by DeepVariant at runtime.

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  Genomics team in Google Brain

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Commits on Dec 13, 2017

• Improvements to md_extract_cmd and case studies.

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  Genomics team in Google Brain

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• Update DeepVariant documentation to reflect the new binaries version (0.4.1).

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  Genomics team in Google Brain

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Commits on Dec 8, 2017

• Add -P to gsutil cp commands on the BIN_DIR so that executable files have their executable bit set after fetching.

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  mdepristo

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Commits on Dec 1, 2017

• Initial release of DeepVariant

  ThomasColthurst

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