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All instances of nxt on your machine should now share preferences/configs found at
$USERPROFILE/nxt
After launching with this update you may find your preferences reset. This will happen if you were only working with nxt_maya for sure. If you want your old preferences, navigate to
os.path.expanduser("~/nxt")
and copy the contents to the new unified location atos.path.expandvars("$USERPROFILE/nxt")