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fix(arborist): clean up stale .store and hoisted dirs on strategy switch - #9649

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Backport of #9647 to release/v11.

…tch (#9647)

In continuation of our exploration of using `install-strategy=linked` in
the [Gutenberg
monorepo](WordPress/gutenberg#75814), which
powers the WordPress Block Editor.

Switching `install-strategy` in the same project directory left behind
the previous strategy's layout. Going hoisted → linked kept the stale
real top-level transitive directories alongside the new `.store/` and
symlinks; going linked → hoisted kept the entire `node_modules/.store/`
directory. A fresh install of either strategy was already clean — only
the switch was affected.

## Why

Under the linked strategy the actual tree the diff compares against is
synthesized from the ideal tree (`#buildLinkedActualForDiff`), so real
directories left over from a prior hoisted layout are never seen, and
`#cleanOrphanedTopLevelLinks` only removed symlinks. In the other
direction `load-actual` ignores dot-directories, so the hoisted diff
never sees `node_modules/.store` and never removes it.

## How

`reify.js` now removes the leftover `.store` on a non-linked reify via
`#removeStaleStoreDir`. The store lives only at the project root and is
exclusively a linked artifact, so a single removal covers the project.
It runs only for a full-project install — a workspace-filtered or
`--workspaces=false` install is skipped, because out-of-scope workspaces
may still link into the store.

`#cleanOrphanedTopLevelLinks` (run only under linked) additionally
removes stale real package directories — a directory containing a
`package.json` that is not in the ideal tree's valid top-level set — and
prunes an emptied `@scope` directory afterward. Non-package real
directories and symlinks pointing outside the project are still
preserved.

The valid-top-level collection in `#cleanOrphanedStoreEntries` no longer
skips non-link nodes, so the root's bundled dependencies — materialized
as real top-level directories under linked — are recorded as valid and
never swept as stale.

## References

Fixes #9615
Part of #9608

(cherry picked from commit ca92323)
@owlstronaut
owlstronaut merged commit 4c9eacb into release/v11 Jun 24, 2026
33 checks passed
@owlstronaut
owlstronaut deleted the backport/v11/9647 branch June 24, 2026 20:09
@github-actions github-actions Bot mentioned this pull request Jun 24, 2026
renovate Bot added a commit to gwennlbh/swarpc that referenced this pull request Oct 7, 2026
##### [v11.21.0](npm/cli@v11.20.0...5fd1e17)

##### [v11.20.0](https://github.com/npm/cli/releases/tag/v11.20.0)

##### Features

- [`0b3c699`](npm/cli@0b3c699) [#9994](npm/cli#9994) token: support read-write-stage-only granular access tokens ([#9994](npm/cli#9994)) ([@github-actions](https://github.com/github-actions)\[bot], [@Tayvon](https://github.com/Tayvon), [@Copilot](https://github.com/Copilot))
- [`b872816`](npm/cli@b872816) [#9920](npm/cli#9920) stage: display staged package status ([#9920](npm/cli#9920)) ([@github-actions](https://github.com/github-actions)\[bot], [@joelverhagen](https://github.com/joelverhagen))

##### Bug Fixes

- [`ddbadfc`](npm/cli@ddbadfc) [#9947](npm/cli#9947) provenance-file takes precedence over OIDC auto-generated provenance ([#9947](npm/cli#9947)) ([@github-actions](https://github.com/github-actions)\[bot], [@yunseo-kim](https://github.com/yunseo-kim))
- [`64d4b4b`](npm/cli@64d4b4b) [#9937](npm/cli#9937) config: avoid exporting persistent allow-scripts ([#9937](npm/cli#9937)) ([@github-actions](https://github.com/github-actions)\[bot], [@Fnine59](https://github.com/Fnine59))
- [`70317da`](npm/cli@70317da) [#9930](npm/cli#9930) arborist: reject uninstall args that carry a version ([#9930](npm/cli#9930)) ([@github-actions](https://github.com/github-actions)\[bot], [@lazerg](https://github.com/lazerg))
- [`55ae484`](npm/cli@55ae484) [#9929](npm/cli#9929) arborist: match allowScripts keys for local paths ([#9929](npm/cli#9929)) ([@github-actions](https://github.com/github-actions)\[bot], [@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [`7f1f2b7`](npm/cli@7f1f2b7) [#9928](npm/cli#9928) keep dry-run output valid json ([#9928](npm/cli#9928)) ([@github-actions](https://github.com/github-actions)\[bot], [@martinrrm](https://github.com/martinrrm))
- [`f28cca9`](npm/cli@f28cca9) [#9927](npm/cli#9927) don't print the funding message for global installs ([#9927](npm/cli#9927)) ([@github-actions](https://github.com/github-actions)\[bot], [@lazerg](https://github.com/lazerg))

##### Chores

- [`6ff3000`](npm/cli@6ff3000) [#10010](npm/cli#10010) pack: select workspace through config ([#10010](npm/cli#10010)) ([@github-actions](https://github.com/github-actions)\[bot], [@reggi](https://github.com/reggi))
- [`afdc5bd`](npm/cli@afdc5bd) [#9932](npm/cli#9932) pass nodedir to node-gyp via npm_package_config env in node integration ([#9932](npm/cli#9932)) ([@reggi](https://github.com/reggi))
- [`83f95ff`](npm/cli@83f95ff) [#9931](npm/cli#9931) update `node-integration` workflow template to latest actions ([#9931](npm/cli#9931)) ([@reggi](https://github.com/reggi))
- [`f020fba`](npm/cli@f020fba) [#9925](npm/cli#9925) recognize prefixed Node.js PR titles ([#9925](npm/cli#9925)) ([@github-actions](https://github.com/github-actions)\[bot], [@reggi](https://github.com/reggi))

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.2): `@npmcli/arborist@9.9.2`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.13.0): `@npmcli/config@10.13.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.13): `libnpmdiff@8.1.13`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.3.3): `libnpmexec@10.3.3`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.27): `libnpmfund@7.0.27`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.14): `libnpmpack@9.1.14`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpublish-v11.2.1): `libnpmpublish@11.2.1`
##### [v11.19.1](https://github.com/npm/cli/releases/tag/v11.19.1)

##### Bug Fixes

- [`83b750d`](npm/cli@83b750d) [#9916](npm/cli#9916) exempt explicit pack targets from allow-directory ([#9916](npm/cli#9916)) ([@github-actions](https://github.com/github-actions)\[bot], [@ychampion](https://github.com/ychampion), [@ychampion](https://github.com/ychampion))

##### Dependencies

- [`4791b27`](npm/cli@4791b27) [#9872](npm/cli#9872) `undici@6.28.0` ([@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [`823d647`](npm/cli@823d647) [#9872](npm/cli#9872) `ip-address@10.5.0` ([@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [`04f8efe`](npm/cli@04f8efe) [#9872](npm/cli#9872) `brace-expansion@5.0.9` ([@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [`1610280`](npm/cli@1610280) [#9842](npm/cli#9842) `tar@7.5.22` ([#9842](npm/cli#9842)) ([@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.13): `libnpmpack@9.1.13`
##### [v11.19.0](https://github.com/npm/cli/releases/tag/v11.19.0)

##### Features

- [`7d39aa6`](npm/cli@7d39aa6) [#9698](npm/cli#9698) install-scripts: use install-scripts as the warning log title ([@manzoorwanijk](https://github.com/manzoorwanijk))

##### Bug Fixes

- [`3529ca2`](npm/cli@3529ca2) [#9811](npm/cli#9811) pack: honor min-release-age-exclude ([#9811](npm/cli#9811)) ([@github-actions](https://github.com/github-actions)\[bot], [@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))
- [`67f12ae`](npm/cli@67f12ae) [#9810](npm/cli#9810) owner: use scoped registry for user lookup ([#9810](npm/cli#9810)) ([@github-actions](https://github.com/github-actions)\[bot], [@martinrrm](https://github.com/martinrrm), [@Copilot](https://github.com/Copilot))

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.1): `@npmcli/arborist@9.9.1`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.12): `libnpmdiff@8.1.12`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.3.2): `libnpmexec@10.3.2`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.26): `libnpmfund@7.0.26`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.12): `libnpmpack@9.1.12`
##### [v11.18.0](https://github.com/npm/cli/releases/tag/v11.18.0)

##### Features

- [`3021ad6`](npm/cli@3021ad6) [#9694](npm/cli#9694) arborist: extend replace-registry-host with URL prefix matching ([#6110](npm/cli#6110)) ([#9694](npm/cli#9694)) ([@github-actions](https://github.com/github-actions)\[bot], [@u2mejc](https://github.com/u2mejc))
- [`abd8c6b`](npm/cli@abd8c6b) [#9677](npm/cli#9677) graduate the linked install strategy from experimental to stable ([#9677](npm/cli#9677)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`9420673`](npm/cli@9420673) [#9662](npm/cli#9662) install-scripts: prune unused allowScripts entries ([#9662](npm/cli#9662)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`fc9d4c7`](npm/cli@fc9d4c7) [#9635](npm/cli#9635) namespace install-script approval commands under npm install-scripts ([#9635](npm/cli#9635)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`073253f`](npm/cli@073253f) [#9564](npm/cli#9564) warn when min-release-age blocks an audit fix ([#9564](npm/cli#9564)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Bug Fixes

- [`598ffdb`](npm/cli@598ffdb) [#9693](npm/cli#9693) sbom: percent-encode vcs_url qualifier in generated purls ([#9693](npm/cli#9693)) ([@github-actions](https://github.com/github-actions)\[bot], [@ubeddulla](https://github.com/ubeddulla))
- [`05793d0`](npm/cli@05793d0) [#9691](npm/cli#9691) output all the required parameters for npm token list ([#9691](npm/cli#9691)) ([@github-actions](https://github.com/github-actions)\[bot], [@rijildaniel](https://github.com/rijildaniel))
- [`cd57139`](npm/cli@cd57139) [#9669](npm/cli#9669) arborist: surface undeclared workspaces under the linked strategy (backport release/v11) ([#9669](npm/cli#9669)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`5b6ff9c`](npm/cli@5b6ff9c) [#9667](npm/cli#9667) reify: report added count for fresh linked installs ([#9667](npm/cli#9667)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk), [@owlstronaut](https://github.com/owlstronaut))
- [`8f13beb`](npm/cli@8f13beb) [#9664](npm/cli#9664) query: report logical dep location under linked strategy ([#9664](npm/cli#9664)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`168ba30`](npm/cli@168ba30) [#9663](npm/cli#9663) allowScripts: close enforcement gaps ([#9652](npm/cli#9652)) (backport release/v11) ([#9663](npm/cli#9663)) ([@JamieMagee](https://github.com/JamieMagee))
- [`ae64f88`](npm/cli@ae64f88) [#9648](npm/cli#9648) exec: resolve workspace-local bin under the linked install strategy ([#9648](npm/cli#9648)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`784cbe9`](npm/cli@784cbe9) [#9636](npm/cli#9636) ls: restore 100% coverage on release/v11 after [#9633](npm/cli#9633) ([#9636](npm/cli#9636)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`70f0ea5`](npm/cli@70f0ea5) [#9607](npm/cli#9607) approve-scripts: approve deps with no resolved URL by name ([#9607](npm/cli#9607)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`b2e6338`](npm/cli@b2e6338) [#9602](npm/cli#9602) arborist: don't flag inert optional deps in strict-allow-scripts ([#9602](npm/cli#9602)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`6ad5715`](npm/cli@6ad5715) [#9595](npm/cli#9595) link: scope `npm link  --workspace` to the workspace, not the root ([#9595](npm/cli#9595)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))

##### Documentation

- [`3658bb5`](npm/cli@3658bb5) [#9690](npm/cli#9690) recommend install-strategy=linked to catch phantom dependencies ([#9690](npm/cli#9690)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))

##### Dependencies

- [`54656b6`](npm/cli@54656b6) [#9696](npm/cli#9696) `undici@6.27.0`
- [`31c4773`](npm/cli@31c4773) [#9696](npm/cli#9696) `brace-expansion@5.0.7`
- [`e773c77`](npm/cli@e773c77) [#9696](npm/cli#9696) `tar@7.5.19`
- [`f05f6af`](npm/cli@f05f6af) [#9696](npm/cli#9696) `semver@7.8.5`
- [`804f9ba`](npm/cli@804f9ba) [#9580](npm/cli#9580) `npm-profile@12.0.2`

##### Chores

- [`f79b37f`](npm/cli@f79b37f) [#9696](npm/cli#9696) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [`a04cd84`](npm/cli@a04cd84) [#9584](npm/cli#9584) add web-login proxy doneUrl regression for npm-profile fix ([#9584](npm/cli#9584)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.0): `@npmcli/arborist@9.9.0`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.12.0): `@npmcli/config@10.12.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.11): `libnpmdiff@8.1.11`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.3.1): `libnpmexec@10.3.1`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.25): `libnpmfund@7.0.25`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.11): `libnpmpack@9.1.11`

arborist: 9.9.0

#### [9.9.0](npm/cli@arborist-v9.8.0...arborist-v9.9.0) (2026-06-29)

##### Features

- [`3021ad6`](npm/cli@3021ad6) [#9694](npm/cli#9694) arborist: extend replace-registry-host with URL prefix matching ([#6110](npm/cli#6110)) ([#9694](npm/cli#9694)) ([@github-actions](https://github.com/github-actions)\[bot], [@u2mejc](https://github.com/u2mejc))
- [`abd8c6b`](npm/cli@abd8c6b) [#9677](npm/cli#9677) graduate the linked install strategy from experimental to stable ([#9677](npm/cli#9677)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`9420673`](npm/cli@9420673) [#9662](npm/cli#9662) install-scripts: prune unused allowScripts entries ([#9662](npm/cli#9662)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`073253f`](npm/cli@073253f) [#9564](npm/cli#9564) warn when min-release-age blocks an audit fix ([#9564](npm/cli#9564)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Bug Fixes

- [`774875b`](npm/cli@774875b) [#9686](npm/cli#9686) arborist: keep bin links for allowScripts-denied packages ([#9686](npm/cli#9686)) ([@JamieMagee](https://github.com/JamieMagee))
- [`719de1e`](npm/cli@719de1e) [#9673](npm/cli#9673) arborist: apply overrides across a file: link (backport release/v11) ([#9673](npm/cli#9673)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`cd57139`](npm/cli@cd57139) [#9669](npm/cli#9669) arborist: surface undeclared workspaces under the linked strategy (backport release/v11) ([#9669](npm/cli#9669)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`ede32d3`](npm/cli@ede32d3) [#9668](npm/cli#9668) arborist: forward transitive overrides through linked store links ([#9658](npm/cli#9658)) (backport release/v11) ([#9668](npm/cli#9668)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`f503b07`](npm/cli@f503b07) [#9666](npm/cli#9666) correct dev/prod dep flags for workspaces under the linked strategy ([#9666](npm/cli#9666)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`f580889`](npm/cli@f580889) [#9665](npm/cli#9665) arborist: load transitive optional deps into linked actual tree ([#9665](npm/cli#9665)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`8f13beb`](npm/cli@8f13beb) [#9664](npm/cli#9664) query: report logical dep location under linked strategy ([#9664](npm/cli#9664)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`168ba30`](npm/cli@168ba30) [#9663](npm/cli#9663) allowScripts: close enforcement gaps ([#9652](npm/cli#9652)) (backport release/v11) ([#9663](npm/cli#9663)) ([@JamieMagee](https://github.com/JamieMagee))
- [`4c9eacb`](npm/cli@4c9eacb) [#9649](npm/cli#9649) arborist: clean up stale .store and hoisted dirs on strategy switch ([#9649](npm/cli#9649)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`d2c680e`](npm/cli@d2c680e) [#9645](npm/cli#9645) arborist: invalid filterNode crash under the linked strategy ([#9645](npm/cli#9645)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`4e40b1c`](npm/cli@4e40b1c) [#9644](npm/cli#9644) arborist: repair wrong-but-existing symlink target in linked strategy ([#9644](npm/cli#9644)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`9d1774e`](npm/cli@9d1774e) [#9643](npm/cli#9643) arborist: remove stale .bin shims after uninstall under linked ([#9643](npm/cli#9643)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`ed37d24`](npm/cli@ed37d24) [#9642](npm/cli#9642) arborist: record the linked .store layout in the hidden lockfile (backport [#9630](npm/cli#9630)) ([#9642](npm/cli#9642)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`e601d4a`](npm/cli@e601d4a) [#9641](npm/cli#9641) arborist: validate peerOptional conflicts in no-save mutations ([#9641](npm/cli#9641)) ([@owlstronaut](https://github.com/owlstronaut), [@dale-lakes](https://github.com/dale-lakes), [@dale-lakes](https://github.com/dale-lakes))
- [`03cee43`](npm/cli@03cee43) [#9638](npm/cli#9638) arborist: fix audit-report determinism due to dropped via links ([#9638](npm/cli#9638)) ([@github-actions](https://github.com/github-actions)\[bot], [@arjun-vegeta](https://github.com/arjun-vegeta))
- [`a30d855`](npm/cli@a30d855) [#9633](npm/cli#9633) arborist: don't load store packages' devDependencies as required edges ([#9633](npm/cli#9633)) ([@manzoorwanijk](https://github.com/manzoorwanijk))
- [`887ca97`](npm/cli@887ca97) [#9631](npm/cli#9631) arborist: audit the non-isolated tree under the linked strategy ([#9631](npm/cli#9631)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`b2e6338`](npm/cli@b2e6338) [#9602](npm/cli#9602) arborist: don't flag inert optional deps in strict-allow-scripts ([#9602](npm/cli#9602)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`390ebfa`](npm/cli@390ebfa) [#9593](npm/cli#9593) arborist: symlink workspace file: deps on non-workspace local packages ([#9593](npm/cli#9593)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`aaeb2f1`](npm/cli@aaeb2f1) [#9578](npm/cli#9578) arborist: expose store node_modules via NODE_PATH for linked-strategy install scripts ([#9578](npm/cli#9578)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`05b6f0f`](npm/cli@05b6f0f) [#9577](npm/cli#9577) arborist: allow-remote exemption for proxy/mirror-fronted registry tarballs ([#9577](npm/cli#9577)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))

config: 10.12.0

#### [10.12.0](npm/cli@config-v10.11.0...config-v10.12.0) (2026-06-29)

##### Features

- [`3021ad6`](npm/cli@3021ad6) [#9694](npm/cli#9694) arborist: extend replace-registry-host with URL prefix matching ([#6110](npm/cli#6110)) ([#9694](npm/cli#9694)) ([@github-actions](https://github.com/github-actions)\[bot], [@u2mejc](https://github.com/u2mejc))
- [`abd8c6b`](npm/cli@abd8c6b) [#9677](npm/cli#9677) graduate the linked install strategy from experimental to stable ([#9677](npm/cli#9677)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))
- [`073253f`](npm/cli@073253f) [#9564](npm/cli#9564) warn when min-release-age blocks an audit fix ([#9564](npm/cli#9564)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Bug Fixes

- [`b2e6338`](npm/cli@b2e6338) [#9602](npm/cli#9602) arborist: don't flag inert optional deps in strict-allow-scripts ([#9602](npm/cli#9602)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Documentation

- [`3658bb5`](npm/cli@3658bb5) [#9690](npm/cli#9690) recommend install-strategy=linked to catch phantom dependencies ([#9690](npm/cli#9690)) ([@github-actions](https://github.com/github-actions)\[bot], [@manzoorwanijk](https://github.com/manzoorwanijk))

libnpmdiff: 8.1.11

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.0): `@npmcli/arborist@9.9.0`

libnpmexec: 10.3.1

#### [10.3.1](npm/cli@libnpmexec-v10.3.0...libnpmexec-v10.3.1) (2026-06-29)

##### Bug Fixes

- [`f3f2465`](npm/cli@f3f2465) [#9692](npm/cli#9692) exec: prevent shared binPaths pollution across workspace runs ([#9692](npm/cli#9692)) ([@github-actions](https://github.com/github-actions)\[bot], [@arjun-vegeta](https://github.com/arjun-vegeta))
- [`b2e6338`](npm/cli@b2e6338) [#9602](npm/cli#9602) arborist: don't flag inert optional deps in strict-allow-scripts ([#9602](npm/cli#9602)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.0): `@npmcli/arborist@9.9.0`

libnpmfund: 7.0.25

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.0): `@npmcli/arborist@9.9.0`

libnpmpack: 9.1.11

##### Dependencies

- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.9.0): `@npmcli/arborist@9.9.0`
##### [v11.17.0](https://github.com/npm/cli/releases/tag/v11.17.0)

##### Features

- [`ae8ac4e`](npm/cli@ae8ac4e) [#9534](npm/cli#9534) add min-release-age-exclude config ([@JamieMagee](https://github.com/JamieMagee), [@caseyjhol](https://github.com/caseyjhol))
- [`8ff3e48`](npm/cli@8ff3e48) [#9483](npm/cli#9483) allowScripts tooling and inBundle hardening ([#9483](npm/cli#9483)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))

##### Bug Fixes

- [`847cdf8`](npm/cli@847cdf8) [#9541](npm/cli#9541) match dotted and versioned args in approve-scripts/deny-scripts ([@owlstronaut](https://github.com/owlstronaut))
- [`d99f7cb`](npm/cli@d99f7cb) [#9535](npm/cli#9535) emit valid JSON from approve-scripts/deny-scripts --json ([@owlstronaut](https://github.com/owlstronaut))
- [`351a309`](npm/cli@351a309) [#9499](npm/cli#9499) pass script-shell to publish lifecycle hooks ([#9499](npm/cli#9499)) ([@github-actions](https://github.com/github-actions)\[bot])
- [`4fa81df`](npm/cli@4fa81df) [#9497](npm/cli#9497) recognize allowScripts for local link targets ([#9497](npm/cli#9497)) ([@github-actions](https://github.com/github-actions)\[bot], [@cyphercodes](https://github.com/cyphercodes), [@cyphercodes](https://github.com/cyphercodes))
- [`95cf2e9`](npm/cli@95cf2e9) [#9489](npm/cli#9489) validate registry path for allow-remote tarballs ([@Abhinav-143x](https://github.com/Abhinav-143x))
- [`9dd219b`](npm/cli@9dd219b) [#9462](npm/cli#9462) respect allowScripts policy in prune, dedupe, uninstall, audit, and link ([#9462](npm/cli#9462)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`cd8d18a`](npm/cli@cd8d18a) [#9482](npm/cli#9482) list pending scripts in approve-scripts when ignore-scripts is set ([#9482](npm/cli#9482)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`c14e87c`](npm/cli@c14e87c) [#9481](npm/cli#9481) suggest --allow-scripts for global installs in unreviewed-scripts warnings ([#9481](npm/cli#9481)) ([@github-actions](https://github.com/github-actions)\[bot], [@JamieMagee](https://github.com/JamieMagee))
- [`7ade52e`](npm/cli@7ade52e) [#9465](npm/cli#9465) invalid issue template YAML indentation ([#9465](npm/cli#9465)) ([@github-actions](https://github.com/github-actions)\[bot], [@fallintoplace](https://github.com/fallintoplace))
- [`c069622`](npm/cli@c069622) [#9464](npm/cli#9464) show full parent command path in subcommand usage errors ([#9464](npm/cli#9464)) ([@owlstronaut](https://github.com/owlstronaut))
- [`1bb62bb`](npm/cli@1bb62bb) [#9454](npm/cli#9454) config: clarify --all help so it's accurate for approve-scripts and deny-scripts ([@JamieMagee](https://github.com/JamieMagee))
- [`84eeb5f`](npm/cli@84eeb5f) [#9431](npm/cli#9431) audit: don't apply min-release-age before filter when verifying installed signatures ([@JamieMagee](https://github.com/JamieMagee))
- [`3bd3377`](npm/cli@3bd3377) [#9426](npm/cli#9426) block forbidden keys in Queryable setter to prevent prototype pollution ([@12122J](https://github.com/12122J), [@claude](https://github.com/claude))

##### Documentation

- [`a86a7a9`](npm/cli@a86a7a9) [#9522](npm/cli#9522) approve-scripts only throws EGLOBAL when run with -g ([@JamieMagee](https://github.com/JamieMagee))
- [`693bb3d`](npm/cli@693bb3d) [#9508](npm/cli#9508) clarify package.json override value specs ([#9508](npm/cli#9508)) ([@github-actions](https://github.com/github-actions)\[bot], [@ded-furby](https://github.com/ded-furby))
- [`ccffe4a`](npm/cli@ccffe4a) [#9501](npm/cli#9501) use the latest version for global update and outdated's `wanted` ([#9501](npm/cli#9501)) ([@github-actions](https://github.com/github-actions)\[bot], [@liangmiQwQ](https://github.com/liangmiQwQ))
- [`66e97c2`](npm/cli@66e97c2) [#9478](npm/cli#9478) update minimum npm required for npm trust ([@meeech](https://github.com/meeech))

##### Dependencies

- [`bd09b87`](npm/cli@bd09b87) [#9542](npm/cli#9542) `postcss-selector-parser@7.1.4`
- [`95bfc4c`](npm/cli@95bfc4c) [#9542](npm/cli#9542) `tinyglobby@0.2.17`
- [`8c0d5fd`](npm/cli@8c0d5fd) [#9542](npm/cli#9542) `tar@7.5.16`
- [`967d377`](npm/cli@967d377) [#9542](npm/cli#9542) `semver@7.8.4`
- [`cdaac1b`](npm/cli@cdaac1b) [#9542](npm/cli#9542) `pacote@21.5.1`
- [`25c8a9e`](npm/cli@25c8a9e) [#9542](npm/cli#9542) `node-gyp@12.4.0`

##### Chores

- [`2922fa4`](npm/cli@2922fa4) [#9542](npm/cli#9542) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.8.0): `@npmcli/arborist@9.8.0`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.11.0): `@npmcli/config@10.11.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.10): `libnpmdiff@8.1.10`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.3.0): `libnpmexec@10.3.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.24): `libnpmfund@7.0.24`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.10): `libnpmpack@9.1.10`
##### [v11.16.0](https://github.com/npm/cli/releases/tag/v11.16.0)

##### Features

- [`4b67f6e`](npm/cli@4b67f6e) [#9416](npm/cli#9416) publish --access=private alias for restricted ([#9416](npm/cli#9416)) ([@github-actions](https://github.com/github-actions)\[bot], [@reggi](https://github.com/reggi), [@Copilot](https://github.com/Copilot))
- [`a10c7ca`](npm/cli@a10c7ca) [#9415](npm/cli#9415) Phase 1 of `allowScripts` opt-in install-script policy ([#9360](npm/cli#9360)) ([#9415](npm/cli#9415)) ([@owlstronaut](https://github.com/owlstronaut), [@JamieMagee](https://github.com/JamieMagee))

##### Bug Fixes

- [`1f7869b`](npm/cli@1f7869b) [#9411](npm/cli#9411) fix typo of fullMetadata ([@owlstronaut](https://github.com/owlstronaut))
- [`cde03ba`](npm/cli@cde03ba) [#9390](npm/cli#9390) config: pause progress spinner during interactive editor spawn ([#9388](npm/cli#9388)) ([@github-actions](https://github.com/github-actions)\[bot], [@Zelys-DFKH](https://github.com/Zelys-DFKH), [@claude](https://github.com/claude))

##### Documentation

- [`c5e9d73`](npm/cli@c5e9d73) [#9390](npm/cli#9390) Document `npm_old_version` and `npm_new_version` environment variables ([#9389](npm/cli#9389)) ([@github-actions](https://github.com/github-actions)\[bot], [@36degrees](https://github.com/36degrees))

##### Dependencies

- [`cdd7bbc`](npm/cli@cdd7bbc) [#9421](npm/cli#9421) `undici@6.26.0`
- [`fde87c9`](npm/cli@fde87c9) [#9421](npm/cli#9421) `sigstore@4.1.1`
- [`2779793`](npm/cli@2779793) [#9421](npm/cli#9421) `lru-cache@11.5.1`
- [`dea702d`](npm/cli@dea702d) [#9421](npm/cli#9421) `@sigstore/verify@3.1.1`
- [`4eab03f`](npm/cli@4eab03f) [#9421](npm/cli#9421) `@sigstore/core@3.2.1`
- [`74c7323`](npm/cli@74c7323) [#9421](npm/cli#9421) `@npmcli/agent@4.0.2`
- [`edc4ab3`](npm/cli@edc4ab3) [#9421](npm/cli#9421) `semver@7.8.1`
- [`5f6ce33`](npm/cli@5f6ce33) [#9421](npm/cli#9421) `make-fetch-happen@15.0.6`

##### Chores

- [`bd04976`](npm/cli@bd04976) [#9421](npm/cli#9421) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [`aeceb23`](npm/cli@aeceb23) [#9407](npm/cli#9407) sanitize newlines in flags table default and type values ([#9407](npm/cli#9407)) ([@reggi](https://github.com/reggi), [@Copilot](https://github.com/Copilot))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.7.0): `@npmcli/arborist@9.7.0`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.10.0): `@npmcli/config@10.10.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.9): `libnpmdiff@8.1.9`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.2.9): `libnpmexec@10.2.9`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.23): `libnpmfund@7.0.23`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.9): `libnpmpack@9.1.9`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmversion-v8.0.4): `libnpmversion@8.0.4`
##### [v11.15.0](https://github.com/npm/cli/releases/tag/v11.15.0)

##### Features

- [`0d5d899`](npm/cli@0d5d899) [#9379](npm/cli#9379) npm stage ([@reggi](https://github.com/reggi), [@Copilot](https://github.com/Copilot))
- [`1433740`](npm/cli@1433740) [#9376](npm/cli#9376) add permissions support to trust commands ([#9376](npm/cli#9376)) ([@github-actions](https://github.com/github-actions)\[bot], [@reggi](https://github.com/reggi), [@Copilot](https://github.com/Copilot))
- [`8df10f5`](npm/cli@8df10f5) [#9339](npm/cli#9339) add allow-git/allow-file/allow-directory/allow-remote configs ([@owlstronaut](https://github.com/owlstronaut))

##### Bug Fixes

- [`39b625e`](npm/cli@39b625e) [#9381](npm/cli#9381) key stage download --json output by package name ([#9381](npm/cli#9381)) ([@reggi](https://github.com/reggi), [@Copilot](https://github.com/Copilot))
- [`6aa332d`](npm/cli@6aa332d) [#9339](npm/cli#9339) allow min-release-age in npmrc to coexist with --before ([@raazkhnl](https://github.com/raazkhnl))
- [`468550f`](npm/cli@468550f) [#9339](npm/cli#9339) refactor #failureNode, adjust tests and safety ([@owlstronaut](https://github.com/owlstronaut))
- [`cabe249`](npm/cli@cabe249) [#9339](npm/cli#9339) allow-remote=none does not block registry tarballs ([@owlstronaut](https://github.com/owlstronaut))

##### Dependencies

- [`8416a60`](npm/cli@8416a60) [#9383](npm/cli#9383) `socks@2.8.9`
- [`5e5a25b`](npm/cli@5e5a25b) [#9383](npm/cli#9383) `lru-cache@11.5.0`
- [`a6f9ad2`](npm/cli@a6f9ad2) [#9383](npm/cli#9383) `ip-address@10.2.0`
- [`63f8114`](npm/cli@63f8114) [#9383](npm/cli#9383) `brace-expansion@5.0.6`
- [`6918b4c`](npm/cli@6918b4c) [#9383](npm/cli#9383) `bin-links@6.0.2`
- [`bf84079`](npm/cli@bf84079) [#9383](npm/cli#9383) `tar@7.5.15`
- [`bdef82c`](npm/cli@bdef82c) [#9383](npm/cli#9383) `semver@7.8.0`
- [`3f38a67`](npm/cli@3f38a67) [#9383](npm/cli#9383) `hosted-git-info@9.0.3`

##### Chores

- [`816f3bf`](npm/cli@816f3bf) [#9383](npm/cli#9383) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.6.0): `@npmcli/arborist@9.6.0`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.9.1): `@npmcli/config@10.9.1`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.8): `libnpmdiff@8.1.8`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.2.8): `libnpmexec@10.2.8`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.22): `libnpmfund@7.0.22`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.8): `libnpmpack@9.1.8`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpublish-v11.2.0): `libnpmpublish@11.2.0`
##### [v11.14.1](https://github.com/npm/cli/releases/tag/v11.14.1)

##### Bug Fixes

- [`dca12cb`](npm/cli@dca12cb) [#9328](npm/cli#9328) remove settings ([#9328](npm/cli#9328)) ([@github-actions](https://github.com/github-actions)\[bot], [@owlstronaut](https://github.com/owlstronaut))
##### [v11.14.0](https://github.com/npm/cli/releases/tag/v11.14.0)

##### Features

- [`45fc5e0`](npm/cli@45fc5e0) [#9288](npm/cli#9288) add allow-directory, allow-file, and allow-remote ([#9288](npm/cli#9288)) ([@github-actions](https://github.com/github-actions)\[bot], [@wraithgar](https://github.com/wraithgar))

##### Bug Fixes

- [`6c17544`](npm/cli@6c17544) [#9318](npm/cli#9318) sbom: dedupe per-node dependsOn / relationships ([#9318](npm/cli#9318)) ([@github-actions](https://github.com/github-actions)\[bot], [@mikaelkristiansson](https://github.com/mikaelkristiansson))

##### Dependencies

- [`840fe18`](npm/cli@840fe18) [#9322](npm/cli#9322) `socks@10.1.1`
- [`b771289`](npm/cli@b771289) [#9322](npm/cli#9322) `ip-address@10.1.1`
- [`addffcb`](npm/cli@addffcb) [#9322](npm/cli#9322) `cidr-regex@5.0.5`

##### Chores

- [`041fd58`](npm/cli@041fd58) [#9322](npm/cli#9322) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [`89c505a`](npm/cli@89c505a) [#9320](npm/cli#9320) add cli-triage team as codeowner ([#9320](npm/cli#9320)) ([@github-actions](https://github.com/github-actions)\[bot], [@owlstronaut](https://github.com/owlstronaut))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.5.0): `@npmcli/arborist@9.5.0`
- [workspace](https://github.com/npm/cli/releases/tag/config-v10.9.0): `@npmcli/config@10.9.0`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.7): `libnpmdiff@8.1.7`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.2.7): `libnpmexec@10.2.7`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.21): `libnpmfund@7.0.21`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.7): `libnpmpack@9.1.7`
##### [v11.13.0](https://github.com/npm/cli/releases/tag/v11.13.0)

##### Features

- [`8e8dadb`](npm/cli@8e8dadb) [#9246](npm/cli#9246) add `u` as alias for `update` command ([#9246](npm/cli#9246)) ([@github-actions](https://github.com/github-actions)\[bot], [@Ausoj](https://github.com/Ausoj))

##### Bug Fixes

- [`ecd161b`](npm/cli@ecd161b) [#9258](npm/cli#9258) ignore intended error code ([@owlstronaut](https://github.com/owlstronaut))

##### Dependencies

- [`8d2fdcd`](npm/cli@8d2fdcd) [#9272](npm/cli#9272) `lru-cache@11.3.5`
- [`e603d36`](npm/cli@e603d36) [#9272](npm/cli#9272) `node-gyp@12.3.0`
- [`d48b7da`](npm/cli@d48b7da) [#9272](npm/cli#9272) `is-cidr@6.0.4`
- [`032a5ca`](npm/cli@032a5ca) [#9240](npm/cli#9240) `@sigstore/protobuf-specs@0.5.1`
- [`33a81e7`](npm/cli@33a81e7) [#9240](npm/cli#9240) `tinyglobby@0.2.16`
- [`68dc4a0`](npm/cli@68dc4a0) [#9240](npm/cli#9240) `picomatch@4.0.4`
- [`1bb6703`](npm/cli@1bb6703) [#9240](npm/cli#9240) `lru-cache@11.3.3`
- [`37059e4`](npm/cli@37059e4) [#9240](npm/cli#9240) `diff@8.0.4`
- [`fb450ab`](npm/cli@fb450ab) [#9240](npm/cli#9240) `minimatch@10.2.5`
- [`7c4bbbf`](npm/cli@7c4bbbf) [#9240](npm/cli#9240) `tar@7.5.13`
- [`703a3bc`](npm/cli@703a3bc) [#9240](npm/cli#9240) `minipass-flush@1.0.6`

##### Chores

- [`e0724ac`](npm/cli@e0724ac) [#9272](npm/cli#9272) dev dependency updates ([@owlstronaut](https://github.com/owlstronaut))
- [`d249341`](npm/cli@d249341) [#9230](https://github.com/npm/cli/pull/9230) don't run npm update in CI ([@owlstronaut](https://github.com/owlstronaut))
- [workspace](https://github.com/npm/cli/releases/tag/arborist-v9.4.3): `@npmcli/arborist@9.4.3`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmdiff-v8.1.6): `libnpmdiff@8.1.6`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmexec-v10.2.6): `libnpmexec@10.2.6`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmfund-v7.0.20): `libnpmfund@7.0.20`
- [workspace](https://github.com/npm/cli/releases/tag/libnpmpack-v9.1.6): `libnpmpack@9.1.6`
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