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Corrected Freesurfer SegStats #996

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Merged
merged 2 commits into from
Nov 24, 2014
Merged

Corrected Freesurfer SegStats #996

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b9a7b1a
Corrected Freesurfer SegStats
Nov 18, 2014
6da246d
Updated CHANGES
Nov 18, 2014
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2 changes: 2 additions & 0 deletions CHANGES
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,8 @@ Next release
* FIX: Utility interface test dir (https://github.com/nipy/nipype/pull/986)
* FIX: IPython engine directory reset after crash (https://github.com/nipy/nipype/pull/987)
* ENH: Resting state fMRI example with NiPy realignment and no SPM (https://github.com/nipy/nipype/pull/992)
* FIX: Corrected Freesurfer SegStats _list_outputs to avoid error if summary_file is
undefined (issue #994)(https://https://github.com/nipy/nipype/pull/996)

Release 0.10.0 (October 10, 2014)
============
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5 changes: 3 additions & 2 deletions nipype/interfaces/freesurfer/model.py
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Expand Up @@ -635,8 +635,9 @@ class SegStats(FSCommand):

def _list_outputs(self):
outputs = self.output_spec().get()
outputs['summary_file'] = os.path.abspath(self.inputs.summary_file)
if not isdefined(outputs['summary_file']):
if isdefined(self.inputs.summary_file):
outputs['summary_file'] = os.path.abspath(self.inputs.summary_file)
else:
outputs['summary_file'] = os.path.join(os.getcwd(), 'summary.stats')
suffices = dict(avgwf_txt_file='_avgwf.txt', avgwf_file='_avgwf.nii.gz',
sf_avg_file='sfavg.txt')
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