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FIX: Allow max_shnot to be set (auto mode) #2940

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Merged
merged 2 commits into from
Jun 11, 2019
Merged

FIX: Allow max_shnot to be set (auto mode) #2940

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64e01c3
FIX: Allow ``max_sh``not to be set (auto mode)
garikoitz May 31, 2019
68952d4
update specs
oesteban Jun 1, 2019
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4 changes: 1 addition & 3 deletions nipype/interfaces/mrtrix3/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -276,8 +276,6 @@ class ResponseSDInputSpec(MRTrix3BaseInputSpec):
exists=True, argstr='-mask %s', desc='provide initial mask image')
max_sh = InputMultiObject(
traits.Int,
value=[8],
usedefault=True,
argstr='-lmax %s',
sep=',',
desc=('maximum harmonic degree of response function - single value for '
Expand All @@ -303,7 +301,7 @@ class ResponseSD(MRTrix3Base):
>>> resp.inputs.algorithm = 'tournier'
>>> resp.inputs.grad_fsl = ('bvecs', 'bvals')
>>> resp.cmdline # doctest: +ELLIPSIS
'dwi2response tournier -fslgrad bvecs bvals -lmax 8 dwi.mif wm.txt'
'dwi2response tournier -fslgrad bvecs bvals dwi.mif wm.txt'
>>> resp.run() # doctest: +SKIP

# We can also pass in multiple harmonic degrees in the case of multi-shell
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1 change: 0 additions & 1 deletion nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py
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Expand Up @@ -37,7 +37,6 @@ def test_ResponseSD_inputs():
max_sh=dict(
argstr='-lmax %s',
sep=',',
usedefault=True,
),
mtt_file=dict(
argstr='%s',
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