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Nipype multiproc plugin modification to use GPU(s) as resources. #2298

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Nipype multiproc plugin modification to use GPU(s) as resources. #2298

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751e0cc
mixed cpu/gpu scheduling in multiprocessing plugin
schahid Nov 22, 2017
8fc3799
added some comments
schahid Nov 22, 2017
54490f9
try to use GPUtil only if available, otherwise use one GPU
schahid Nov 22, 2017
3b23551
fix for missing command error when calling ants binary
schahid Nov 27, 2017
4d0cbd8
Merge remote-tracking branch 'upstream/master'
effigies Mar 2, 2018
cc992aa
Merge remote-tracking branch 'upstream/master'
effigies Mar 7, 2018
93c97b3
working copy of multiproc plugin
schahid May 25, 2018
e92e0c3
chache arg in base's task_finish_cb method
schahid May 27, 2018
1e1adc8
allow to control single gpu processes using n_procs of the node runni…
schahid Mar 21, 2019
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8 changes: 5 additions & 3 deletions nipype/interfaces/base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1570,10 +1570,12 @@ def __init__(self, command=None, terminal_output=None, **inputs):
super(CommandLine, self).__init__(**inputs)
self._environ = None
# Set command. Input argument takes precedence
self._cmd = command or getattr(self, '_cmd', None)

if self._cmd is None:
if not hasattr(self, '_cmd'):
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this bit should be reverted as the above command is equivalent.

self._cmd = None
if self.cmd is None and command is None:
raise Exception("Missing command")
if command:
self._cmd = command

if terminal_output is not None:
self.terminal_output = terminal_output
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