ENH: --out_itk option for LTAConvert #2176
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Gilles86
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Sep 4, 2017
Codecov Report
@@ Coverage Diff @@
## master #2176 +/- ##
==========================================
- Coverage 72.25% 72.24% -0.02%
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Files 1168 1168
Lines 58405 58408 +3
Branches 8400 8400
==========================================
- Hits 42203 42199 -4
- Misses 14868 14871 +3
- Partials 1334 1338 +4
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Actually, would you mind adding |
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No. Just added it. |
effigies
reviewed
Sep 7, 2017
| xor=('in_lta', 'in_fsl', 'in_mni', 'in_reg', 'in_niftyreg'), | ||
| xor=('in_lta', 'in_fsl', 'in_mni', 'in_reg', 'in_niftyreg', 'in_itk'), | ||
| ), | ||
| in_reg=dict(argstr='--initk %s', |
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This should be in_itk. This file really shouldn't be edited by hand; run make specs and add the changes. (make specs does modify other files, so only commit the ones with changes.)
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Whoops. Sorry, should have seen the comment on the first line. This kind of stuff is a bit new to me. :)
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Freesurfer's lta_convert can also convert to the ITK-format used by ANTS. This can be quite handy, for example when you have a small FOV and want to init a ANTS-registration based on a manual transform made with Freesurfer's Freeview.
This pull extends 69a59a9 by @effigies: bby a few lines, so you can also use out_itk.