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ENH: Add 1dCat, 3dNwarpApply, and add options to 3dBrickStat #2114

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Merged
merged 7 commits into from
Jul 24, 2017

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62442katieb
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Create nipype wrapper for the AFNI command 1dCat. Create nipype wrapper for the AFNI command 3dNwarpApply. Add options to nipype wrapper for the AFNI command 3dBrickStat.

Removed excess files

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Codecov Report

Merging #2114 into master will increase coverage by 0.01%.
The diff coverage is 100%.

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@@            Coverage Diff             @@
##           master    #2114      +/-   ##
==========================================
+ Coverage   72.09%   72.11%   +0.01%     
==========================================
  Files        1144     1144              
  Lines       57673    57711      +38     
  Branches     8265     8265              
==========================================
+ Hits        41582    41620      +38     
  Misses      14784    14784              
  Partials     1307     1307
Flag Coverage Δ
#smoketests 72.11% <100%> (+0.01%) ⬆️
#unittests 69.74% <100%> (+0.02%) ⬆️
Impacted Files Coverage Δ
nipype/interfaces/afni/__init__.py 100% <100%> (ø) ⬆️
nipype/interfaces/afni/utils.py 81.81% <100%> (+1.67%) ⬆️

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codecov-io commented Jul 17, 2017

Codecov Report

Merging #2114 into master will decrease coverage by <.01%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #2114      +/-   ##
==========================================
- Coverage   72.12%   72.11%   -0.01%     
==========================================
  Files        1144     1144              
  Lines       57732    57711      -21     
  Branches     8271     8265       -6     
==========================================
- Hits        41638    41620      -18     
+ Misses      14786    14784       -2     
+ Partials     1308     1307       -1
Flag Coverage Δ
#smoketests 72.11% <100%> (-0.01%) ⬇️
#unittests 69.74% <100%> (-0.01%) ⬇️
Impacted Files Coverage Δ
nipype/interfaces/afni/utils.py 81.81% <100%> (+1.67%) ⬆️
nipype/interfaces/afni/__init__.py 100% <100%> (ø) ⬆️
nipype/interfaces/afni/model.py 79.34% <0%> (-4.76%) ⬇️
nipype/interfaces/io.py 52.91% <0%> (-0.17%) ⬇️
...pype/interfaces/afni/tests/test_auto_Deconvolve.py 85.71% <0%> (ø) ⬆️
nipype/interfaces/afni/tests/test_auto_Remlfit.py 85.71% <0%> (ø) ⬆️

Continue to review full report at Codecov.

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satra added 2 commits July 18, 2017 08:18
* upstream/master:
  fix: retrieve aseg and wmparc stats properly
  [FIX] Deconvolve py27 and py34 compat
  [ENH]: Updated Deconvolve and Remlfit
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satra commented Jul 20, 2017

@62442katieb - could you please merge pull request i've left on your repo?

@satra satra merged commit 4e5d8ec into nipy:master Jul 24, 2017
@satra satra added this to the 0.14.0 milestone Oct 20, 2017
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3 participants