Output warp fields and jacobian correction files in TOPUP. #1976
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nipype/interfaces/fsl/epi.py
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| outputs['out_jacs'] = [os.path.abspath( | ||
| self.inputs.out_jac_prefix + "_%02d" % ( | ||
| i + 1) + Info.output_type_to_ext(self.inputs.output_type)) for i in | ||
| range(n_vols)] |
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As a suggestion for readability:
ext = Info.output_type_to_ext(self.inputs.output_type)
fmt = os.path.abspath('{prefix}_{i:02d}{ext}').format
outputs['out_warps'] = [fmt(prefix=self.inputs.out_warp_prefix, i=i, ext=ext)
for i in range(1, n_vols + 1)]
outputs['out_jacs'] = [fmt(prefix=self.inputs.out_jac_prefix, i=i, ext=ext)
for i in range(1, n_vols + 1)]| out_jac_prefix = traits.Str("jac", argstr='--jacout=%s', | ||
| hash_files=False, | ||
| desc='prefix for the warpfield images', | ||
| usedefault=True) |
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Does making these required outputs have the potential to produce large amounts of data?
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I don't thinks so. Those files will also be automatically deleted if no used.
Codecov Report
@@ Coverage Diff @@
## master #1976 +/- ##
==========================================
- Coverage 72.63% 72.63% -0.01%
==========================================
Files 1070 1070
Lines 54407 54417 +10
Branches 7857 7860 +3
==========================================
+ Hits 39517 39524 +7
- Misses 13659 13662 +3
Partials 1231 1231
Continue to review full report at Codecov.
|
Codecov Report
@@ Coverage Diff @@
## master #1976 +/- ##
==========================================
- Coverage 72.63% 72.63% -0.01%
==========================================
Files 1070 1070
Lines 54407 54417 +10
Branches 7857 7860 +3
==========================================
+ Hits 39517 39524 +7
- Misses 13659 13662 +3
Partials 1231 1231
Continue to review full report at Codecov.
|
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