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ref: slurm's job status checker #1853

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ref: slurm's job status checker #1853

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67b9d73
fix: auto test
mgxd Feb 24, 2017
87b0df6
rev: remove commandline interface
mgxd Feb 24, 2017
8683837
Merge branch 'fix/slurm' of github.com:mgxd/nipype into fix/slurm
mgxd Feb 24, 2017
579733f
rev: stop slurm invalid jobid error
mgxd Feb 27, 2017
c92bfb7
fix: autotest
mgxd Feb 27, 2017
ac26163
Merge branch 'master' of github.com:nipy/nipype into fix/slurm
mgxd Feb 27, 2017
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10 changes: 6 additions & 4 deletions nipype/pipeline/plugins/slurm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@
from ...interfaces.base import CommandLine
from .base import (SGELikeBatchManagerBase, logger, iflogger, logging)

import subprocess


class SLURMPlugin(SGELikeBatchManagerBase):
Expand Down Expand Up @@ -60,10 +61,11 @@ def __init__(self, **kwargs):

def _is_pending(self, taskid):
# subprocess.Popen requires taskid to be a string
res = CommandLine('squeue',
args=' '.join(['-j', '%s' % taskid]),
terminal_output='allatonce').run()
return res.runtime.stdout.find(str(taskid)) > -1
proc = subprocess.Popen(["squeue", '-j', '%s' % taskid],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
o, _ = proc.communicate()
return o.find(str(taskid)) > -1

def _submit_batchtask(self, scriptfile, node):
"""
Expand Down