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Pytest#1722

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satra merged 84 commits intonipy:masternipy/nipype:masterfrom

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Dec 10, 2016

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Commits on Dec 9, 2016

• pytest version of test_utility

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• removing nose from travis, testing already rewritten tests using pytest

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• changing tests: removing yield and nose library, introducing pytest parametrize, fixture, skipif, shortening a few functions

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• removing extra imports within functions

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• the simplest change to py.test; all class structure is the same

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• changing import statements

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• adding previously changed tests to pytest (forgot to do it, so they were not tested by travis)

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• removing nose/unittest library and adding py.test; didn't change the structure

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• changing tests in test_base to py.test: removing nose library, changing asserts, fixture for creating files, some problems with exceptions

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• small editing in various files

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• testing py.test and the test_bunch_hash; I don't understand behavior, but adding pdb.set_trace() or running py.test -s could change the output of the test

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• checking if the object is a string and a path in get_bunch_hash; pytest with and without output capturing should work

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• changing generator of auto-tests, tools/checkspecs.py, so it uses assert, not yield asser_equal; all test_auto* were changed (running python2 tools/checkspec

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• testing all interface/tests using py.test (still doesnt check all nipype, have some errors/fails that could be related to yield)

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• removing assert_equal and imports that are not used

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• changing unittest to pytest

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• changing test_spec_JoinFusion (ants) to pytest

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• adding interface/ants to travis

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• moving to pytest the fsl tests

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• finished fsl/tests/test_maths: the general structure of the file was changed significantly, created fixture with params, no big changes with tests function; test_stdimage is failing

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• fixing for python3

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• changing more tests from fsl to pytest

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• changing last tests from fsl to pytest (still have 3 failed, i believe they should fail); adding fsl to travis file

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• testing freesurface with travis

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• changing tests to pytest within spm

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• changing rest of the tests from spm to pytest; including in travis

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• changing tests from nitime to pytest; including in travis

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• changing tests from freesurface to pytest; did NOT run them (test containers do not have freesurface)

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• fixing some fixtures

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• running pytest on full interface dir; it still have 3 failures from fsl and some test that are always skipped

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• temporal version without new auto tests, just checking something

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• coming back to the new auto tests

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• temporarily removing the assert that gives 3 failing tests

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• removing classmethod decorator (they were not really classmethods)

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• changing tests from algorithms to pytest; leaving mock library in one test

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• changing pipeline tests to pytest; some tests are xfail without any description

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• changing caching tests to pytest

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• changing testing tests to pytest; still should remove mock

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• changing tests from utils to pytest

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• changing tests from workflow to pytest; there is still mock library used

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• including changes from #1707

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• running py.test for whole nipype

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• fixing the problem with test_BaseInterface (resetting the input_spec)

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• small cleaning

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• removing skipif from a new test (skipif is already applied to whole class)

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• changing assertRaisesRegexp from unittest to pytest.raises_regexp; pytest-raisesregexp plugin has to be installed

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• adjusting a new test to pytest

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• adding pytest-raisesregexp installation to travis

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• fixing the travis file

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• a small adjustment to on auto test after rebase

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• small cleaning after rebase

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• changing # doctest: +IGNORE_UNICODE to # doctest: +ALLOW_UNICODE; +IGNORE_UNICODE does not work with pytest

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• checking doctest with pytest; had to install click library; 3 doctest will probably fail

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• fixing travis file

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• fixing travis file

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• changing 2 docstrings to pass pytest with doctests

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• fixing multiproc test

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• changing the circle runs: it runs a new script run_pytest.sh instead of run_nosetests.sh; run_pytests needs some more work; does not create xml files that can be used by codecov (testing pytest-cov)

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• trying to use xml files and flags with codecov

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• fixing xml file names

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• updating my comments within run_pytest

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• updating multiproc tests after rebasing

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• updating preprocess tests after rebasing; had to fix one line (waiting for a confirmation from the author)

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• changing requirements.txt and info.py: removing nose and doctest-ignore-unicode, adding pytest; removing extra installation from travis

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• changing pip to conda in test_pytest.sh

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• fixing TESTS_REQUIRES in info.py

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• removing notes about mocking and patching; will create another PR

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• removing install pytest from travis and run_pytest; both travis and circle run pip install requirements.txt first (circle is building new containers that depend on the current version of the file)

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• removing the comments that described my changes

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• removing tests that contained import statements only

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• applying my suggestions from my notes

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• removing my notes regarding further improvements or my small concerns

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• removing notes/questions from run_pytest

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• removing run_nosetest script

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• explicitly importing numpy.testing where assert_equal or assert_almost_equal from numpy is used; small cleaning of imports that are not used

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• removing some remnants of nose in test functions or docstrings

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• updating rtd_requirements.txt and doc/devel/testing_nipype.rst to the pytest testing framework

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• changing Makefile: updating test-code and test-coverage, removed test-doc

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• checking sys.version_info instead of TRAVIS_PYTHON_VERSION in the multiproc tests

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• fixing test_confounds.py after rebasing

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• all test with plugin= has been mark as skipped until the issue is solved

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• fixing the last commit

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• removing pip install nose from Dockerfiles

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• removing nose from new tests after rebasing

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