[MRG] fix: update provenance creation to use released prov library #1279
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…prov * upstream/pr/1278: Removed verbose input (only available in current master of ANTs). Will wait for next release to add. Added old class names for backwards compatibility, included DeprecationWarning Standardized imports for ANTs Finished TODO items in ApplyTransforms and added option to Atropos Added interpolation_parameters, float and verbose to ApplyTransforms and added use_random_seed and verbose to Atropos Finished TODO items in resampling (ApplyTransforms) PEP8 and other style corrections. Including doctstrings using multi-line string formatting. Changed class names for antsBrainExtraction and antsCorticalThickness. Removed redundant _format_xarray from ANTSCommand and replaced other join functions with _format_xarray
…se_current_prov * origin/fix/use_current_prov: fix: changing commit format to support py3
…se_current_prov * origin/fix/use_current_prov: fix: string decoding for prov literal and few pipeline job submission info statements
satra
changed the title
|
@chrisfilo, @bcipolli - this is ready for review |
|
Would a rebase resolve it? Because that commit should already be in master. Edit: It rebased against nipy:master with no |
* upstream/master: fix: ensure that T2 file gets used to clean surface
|
this should be better, but i was also a little sloppy with the commits and committed a few other things! |
|
It's OK--this is way better, much easier to review. Thanks! |
|
hey folks, any thoughts here. i'd like to merge this as it ensures we have a clean install and operation across systems. |
|
Sorry @satra , I don't know the first thing about provenance, nor this package. Downloaded some things to read, but won't be able to get to them until Friday or so.. |
* upstream/master: Correct versions and consistency in install.rst fix:import utils needed one more dot fix: absolute to relative imports add vtk version checking in fsl interfaces update CHANGES Fix nipy#1218 only, not addressing nipy#973 force setting ETS_TOOLKIT before tvtk nipy#972 Created TVTKBaseInterface. Should fix nipy#1218
satra
force-pushed
the
fix/use_current_prov
branch
from
65304d3 to
526571d
Compare
…se_current_prov * origin/fix/use_current_prov: fix: use text_type on str for exceptions
* upstream/master: add faulthandler
chrisgorgo
added a commit
that referenced
this pull request
Dec 14, 2015
[MRG] fix: update provenance creation to use released prov library
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.