Merge pull request #128 from oesteban/fix/107

FIX: Limit ``3dQwarp`` to maximum 4 CPUs for stability reasons
nipreps · Nov 26, 2020 · d1b19ae · d1b19ae
2 parents 6763b84 + ad30e73
commit d1b19ae
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/sdcflows/workflows/pepolar.py b/sdcflows/workflows/pepolar.py
@@ -122,8 +122,8 @@ def init_pepolar_unwarp_wf(omp_nthreads=1, matched_pe=False,
 
     qwarp = pe.Node(afni.QwarpPlusMinus(
         pblur=[0.05, 0.05], blur=[-1, -1], noweight=True, minpatch=9, nopadWARP=True,
-        environ={'OMP_NUM_THREADS': '%d' % omp_nthreads}),
-        name='qwarp', n_procs=omp_nthreads)
+        environ={'OMP_NUM_THREADS': f"{min(omp_nthreads, 4)}"}),
+        name='qwarp', n_procs=min(omp_nthreads, 4))
 
     to_ants = pe.Node(niu.Function(function=_fix_hdr), name='to_ants',
                       mem_gb=0.01)