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Jul 29, 2017
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ENH: Use updated ICA-AROMA #611

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ENH: Use updated ICA-AROMA
effigies Jul 26, 2017
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DOC: Updated version [docs only]
effigies Jul 28, 2017
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1 change: 1 addition & 0 deletions CHANGES.rst
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Expand Up @@ -7,6 +7,7 @@ With thanks to Yaroslav Halchenko and Ilkay Isik for contributions.
* [FIX] Conformation failure in thick-slice, oblique T1w datasets (#601)
* [FIX] Crash/report failure of phase-difference SDC pipeline (#602, #604)
* [DOC] Save logs to output directory (#605)
* [ENH] Upgrade to ICA-AROMA 0.4.1-beta

0.5.4 (20th of July 2017)
=========================
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10 changes: 5 additions & 5 deletions Dockerfile
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Expand Up @@ -101,12 +101,12 @@ RUN apt-get install -y nodejs
RUN npm install -g svgo

# Installing and setting up ICA_AROMA
RUN curl -sSLO https://github.com/rhr-pruim/ICA-AROMA/archive/v0.4-beta.tar.gz &&\
tar -xf v0.4-beta.tar.gz -C /opt &&\
chmod +x /opt/ICA-AROMA-0.4-beta/ICA_AROMA.py &&\
chmod +x /opt/ICA-AROMA-0.4-beta/ICA_AROMA_functions.py
RUN mkdir -p /opt/ICA-AROMA && \
curl -sSL "https://github.com/rhr-pruim/ICA-AROMA/archive/v0.4.1-beta.tar.gz" \
| tar -xzC /opt/ICA-AROMA --strip-components 1 && \
chmod +x /opt/ICA-AROMA/ICA_AROMA.py

ENV PATH=/opt/ICA-AROMA-0.4-beta:$PATH
ENV PATH=/opt/ICA-AROMA:$PATH

# Installing and setting up miniconda
RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-4.3.11-Linux-x86_64.sh && \
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2 changes: 1 addition & 1 deletion docs/installation.rst
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Expand Up @@ -128,4 +128,4 @@ software tools:
- `AFNI <https://afni.nimh.nih.gov/>`_ (version Debian-16.2.07)
- `C3D <https://sourceforge.net/projects/c3d/>`_ (version 1.0.0)
- `FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`_ (version 6.0.0)
- `ICA-AROMA <https://github.com/rhr-pruim/ICA-AROMA/>`_ (version 0.4-beta)
- `ICA-AROMA <https://github.com/rhr-pruim/ICA-AROMA/>`_ (version 0.4.1-beta)