Skip to content

FIX: Output NaN columns for CompCor on failure #1456

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
wants to merge 3 commits into from

Conversation

effigies
Copy link
Member

Restores #1443

@oesteban
Copy link
Member

oesteban commented Jan 7, 2019

What is the status of this one?

@effigies
Copy link
Member Author

effigies commented Jan 7, 2019

The tests were failing... I haven't had time to look at why, so I just reverted and reopened this PR as a reminder to get back to this.

@oesteban
Copy link
Member

oesteban commented Jan 7, 2019

Can you recall whether the tests fail because of the problem building docs? Maybe a naive re-run would suffice?

@effigies
Copy link
Member Author

effigies commented Jan 8, 2019

No. From the logs:

traits.trait_errors.TraitError: Cannot set the undefined 'generate_report' attribute of a 'TCompCorInputSpec' object.
fMRIPrep: Please report errors to https://github.com/poldracklab/fmriprep/issues

This might be a bug in the nipype patch. Guess we should look before the next release.

@oesteban
Copy link
Member

oesteban commented May 5, 2019

@rciric could you evaluate and inform as to whether this PR is still necessary or it has been superseded by your revision of the confounds?

@oesteban
Copy link
Member

This PR has gone stale. Please follow up on the original issue (#1433)

@oesteban oesteban closed this May 21, 2019
@oesteban oesteban deleted the revert-1455-revert-1443-fix/compcor_nans branch July 20, 2019 06:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants