Skip to content

Update Confounds #1301

Closed
Closed
@effigies

Description

@effigies

Filename

Old New
func/sub-<sub_id>_task-<task_id>_run-<run_id>_bold_confounds.tsv func/sub-<sub_id>_task-<task_id>_run-<run_id>_desc-confounds_regressors.tsv

Columns

Old New
non-stdDVARS DVARS
vx-wisestdDVARS <remove>

I will note that RC1 indicated that X, Y, Z were to become TransX, TransY and TransZ as well. This was not generally discussed and made it into RC1 as a function of copy-paste. I think the impact here would be fairly far reaching for little gain, so I'm leaving that off this list until the discussion is resolved.

Metadata

a/tCompCor columns must have an associated Method metadata. We can probably do this with:

fmriprep/desc-confounds_regressors.json:

{
    "aCompCor00": {"Method": "aCompCor"},
    "aCompCor01": {"Method": "aCompCor"},
    ...
}

GlobalSignal, WhiteMatter and CSF should have the following metadata:

{
    "GlobalSignal": {"Method": "Mean"},
    "WhiteMatter": {"Method": "Mean"},
    "CSF": {"Method": "Mean"}
}

AROMAaggrCompXX should indicate ICA-AROMA version. Not sure whether "Method" can be a dict with "Name" and "Version", or what.

Metadata

Metadata

Assignees

No one assigned

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions