nilesh-iiita
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SQLAlchemy dialect for BigQuery
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
User-friendly AI Interface (Supports Ollama, OpenAI API, ...)
Deploying a FastAPI app on Google Cloud Run
Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
Tips and tricks we learn at CGDS to get stuff working
LaTeX academicons package for high quality icons of online academic profiles.
Differential expression of RNA-seq data using the Negative Binomial
Short code snippets for all your development needs
Template OOD app for using BDS's RStudio Singularity app
Bayesian Analysis of Multi-Sample Spatial Transcriptomics Data
Bayesian mutivariate models for clustering spatial transcriptomics data
Classification of Hindi alphabets using Convolutional Neural Network.
Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants
Django 4 by example (4th Edition) published by Packt
NLP-based method to mine gene and function relationships from published articles.
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Updated Apr 13, 2023
https://www.sc-best-practices.org
A catalog of appyter notebooks
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
QIIME 2 tutorials using the Artifact API
Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)
