I scratched a few itches and here's the result - hope you like it

.classpath

@@ -1,10 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="src" path="src/main"/>
-	<classpathentry kind="src" path="src/test"/>
+	<classpathentry kind="src" path="src/main/java"/>
+	<classpathentry kind="src" path="src/test/java"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="lib" path="lib/commons-cli-1.0.jar"/>
-	<classpathentry kind="lib" path="lib/junit.jar"/>
-	<classpathentry kind="lib" path="lib/ant.jar"/>
+	<classpathentry kind="con" path="org.apache.ivyde.eclipse.cpcontainer.IVYDE_CONTAINER/?project=zipdiff&amp;ivyXmlPath=ivy.xml&amp;confs=*&amp;ivySettingsPath=ivy.settings.xml&amp;loadSettingsOnDemand=false&amp;ivyUserDir=&amp;propertyFiles="/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

.gitignore

@@ -4,3 +4,8 @@ velocity.log
 build
 bin
 junit-reports
+lib
+.DS_Store
+.idea
+*~
+*.iml

.project

@@ -1,17 +1,18 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<projectDescription>
-	<name>zipdiff</name>
-	<comment></comment>
-	<projects>
-	</projects>
-	<buildSpec>
-		<buildCommand>
-			<name>org.eclipse.jdt.core.javabuilder</name>
-			<arguments>
-			</arguments>
-		</buildCommand>
-	</buildSpec>
-	<natures>
-		<nature>org.eclipse.jdt.core.javanature</nature>
-	</natures>
-</projectDescription>
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>zipdiff</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.apache.ivyde.eclipse.ivynature</nature>
+	</natures>
+</projectDescription>

.settings/edu.umd.cs.findbugs.core.prefs

@@ -0,0 +1,132 @@
+#FindBugs User Preferences
+#Tue Apr 23 16:18:26 CEST 2013
+cloud_id=edu.umd.cs.findbugs.cloud.doNothingCloud
+detectorAppendingToAnObjectOutputStream=AppendingToAnObjectOutputStream|true
+detectorAtomicityProblem=AtomicityProblem|true
+detectorBadAppletConstructor=BadAppletConstructor|false
+detectorBadResultSetAccess=BadResultSetAccess|true
+detectorBadSyntaxForRegularExpression=BadSyntaxForRegularExpression|true
+detectorBadUseOfReturnValue=BadUseOfReturnValue|true
+detectorBadlyOverriddenAdapter=BadlyOverriddenAdapter|true
+detectorBooleanReturnNull=BooleanReturnNull|true
+detectorCallToUnsupportedMethod=CallToUnsupportedMethod|false
+detectorCheckExpectedWarnings=CheckExpectedWarnings|false
+detectorCheckImmutableAnnotation=CheckImmutableAnnotation|true
+detectorCheckTypeQualifiers=CheckTypeQualifiers|true
+detectorCloneIdiom=CloneIdiom|true
+detectorComparatorIdiom=ComparatorIdiom|true
+detectorConfusedInheritance=ConfusedInheritance|true
+detectorConfusionBetweenInheritedAndOuterMethod=ConfusionBetweenInheritedAndOuterMethod|true
+detectorCrossSiteScripting=CrossSiteScripting|true
+detectorDefaultEncodingDetector=DefaultEncodingDetector|true
+detectorDoInsideDoPrivileged=DoInsideDoPrivileged|true
+detectorDontCatchIllegalMonitorStateException=DontCatchIllegalMonitorStateException|true
+detectorDontIgnoreResultOfPutIfAbsent=DontIgnoreResultOfPutIfAbsent|true
+detectorDontUseEnum=DontUseEnum|true
+detectorDroppedException=DroppedException|true
+detectorDumbMethodInvocations=DumbMethodInvocations|true
+detectorDumbMethods=DumbMethods|true
+detectorDuplicateBranches=DuplicateBranches|true
+detectorEmptyZipFileEntry=EmptyZipFileEntry|true
+detectorEqualsOperandShouldHaveClassCompatibleWithThis=EqualsOperandShouldHaveClassCompatibleWithThis|true
+detectorExplicitSerialization=ExplicitSerialization|true
+detectorFinalizerNullsFields=FinalizerNullsFields|true
+detectorFindBadCast2=FindBadCast2|true
+detectorFindBadForLoop=FindBadForLoop|true
+detectorFindCircularDependencies=FindCircularDependencies|false
+detectorFindDeadLocalStores=FindDeadLocalStores|true
+detectorFindDoubleCheck=FindDoubleCheck|true
+detectorFindEmptySynchronizedBlock=FindEmptySynchronizedBlock|true
+detectorFindFieldSelfAssignment=FindFieldSelfAssignment|true
+detectorFindFinalizeInvocations=FindFinalizeInvocations|true
+detectorFindFloatEquality=FindFloatEquality|true
+detectorFindHEmismatch=FindHEmismatch|true
+detectorFindInconsistentSync2=FindInconsistentSync2|true
+detectorFindJSR166LockMonitorenter=FindJSR166LockMonitorenter|true
+detectorFindLocalSelfAssignment2=FindLocalSelfAssignment2|true
+detectorFindMaskedFields=FindMaskedFields|true
+detectorFindMismatchedWaitOrNotify=FindMismatchedWaitOrNotify|true
+detectorFindNakedNotify=FindNakedNotify|true
+detectorFindNonShortCircuit=FindNonShortCircuit|true
+detectorFindNullDeref=FindNullDeref|true
+detectorFindNullDerefsInvolvingNonShortCircuitEvaluation=FindNullDerefsInvolvingNonShortCircuitEvaluation|true
+detectorFindOpenStream=FindOpenStream|true
+detectorFindPuzzlers=FindPuzzlers|true
+detectorFindRefComparison=FindRefComparison|true
+detectorFindReturnRef=FindReturnRef|true
+detectorFindRunInvocations=FindRunInvocations|true
+detectorFindSelfComparison=FindSelfComparison|true
+detectorFindSelfComparison2=FindSelfComparison2|true
+detectorFindSleepWithLockHeld=FindSleepWithLockHeld|true
+detectorFindSpinLoop=FindSpinLoop|true
+detectorFindSqlInjection=FindSqlInjection|true
+detectorFindTwoLockWait=FindTwoLockWait|true
+detectorFindUncalledPrivateMethods=FindUncalledPrivateMethods|true
+detectorFindUnconditionalWait=FindUnconditionalWait|true
+detectorFindUninitializedGet=FindUninitializedGet|true
+detectorFindUnrelatedTypesInGenericContainer=FindUnrelatedTypesInGenericContainer|true
+detectorFindUnreleasedLock=FindUnreleasedLock|true
+detectorFindUnsatisfiedObligation=FindUnsatisfiedObligation|true
+detectorFindUnsyncGet=FindUnsyncGet|true
+detectorFindUseOfNonSerializableValue=FindUseOfNonSerializableValue|true
+detectorFindUselessControlFlow=FindUselessControlFlow|true
+detectorFormatStringChecker=FormatStringChecker|true
+detectorHugeSharedStringConstants=HugeSharedStringConstants|true
+detectorIDivResultCastToDouble=IDivResultCastToDouble|true
+detectorIncompatMask=IncompatMask|true
+detectorInconsistentAnnotations=InconsistentAnnotations|true
+detectorInefficientMemberAccess=InefficientMemberAccess|false
+detectorInefficientToArray=InefficientToArray|true
+detectorInfiniteLoop=InfiniteLoop|true
+detectorInfiniteRecursiveLoop=InfiniteRecursiveLoop|true
+detectorInheritanceUnsafeGetResource=InheritanceUnsafeGetResource|true
+detectorInitializationChain=InitializationChain|true
+detectorInitializeNonnullFieldsInConstructor=InitializeNonnullFieldsInConstructor|true
+detectorInstantiateStaticClass=InstantiateStaticClass|true
+detectorIntCast2LongAsInstant=IntCast2LongAsInstant|true
+detectorInvalidJUnitTest=InvalidJUnitTest|true
+detectorIteratorIdioms=IteratorIdioms|true
+detectorLazyInit=LazyInit|true
+detectorLoadOfKnownNullValue=LoadOfKnownNullValue|true
+detectorLostLoggerDueToWeakReference=LostLoggerDueToWeakReference|true
+detectorMethodReturnCheck=MethodReturnCheck|true
+detectorMultithreadedInstanceAccess=MultithreadedInstanceAccess|true
+detectorMutableLock=MutableLock|true
+detectorMutableStaticFields=MutableStaticFields|true
+detectorNaming=Naming|true
+detectorNoteUnconditionalParamDerefs=NoteUnconditionalParamDerefs|true
+detectorNumberConstructor=NumberConstructor|true
+detectorOverridingEqualsNotSymmetrical=OverridingEqualsNotSymmetrical|true
+detectorPreferZeroLengthArrays=PreferZeroLengthArrays|true
+detectorPublicSemaphores=PublicSemaphores|false
+detectorQuestionableBooleanAssignment=QuestionableBooleanAssignment|true
+detectorReadOfInstanceFieldInMethodInvokedByConstructorInSuperclass=ReadOfInstanceFieldInMethodInvokedByConstructorInSuperclass|true
+detectorReadReturnShouldBeChecked=ReadReturnShouldBeChecked|true
+detectorRedundantInterfaces=RedundantInterfaces|true
+detectorRepeatedConditionals=RepeatedConditionals|true
+detectorRuntimeExceptionCapture=RuntimeExceptionCapture|true
+detectorSerializableIdiom=SerializableIdiom|true
+detectorStartInConstructor=StartInConstructor|true
+detectorStaticCalendarDetector=StaticCalendarDetector|true
+detectorStringConcatenation=StringConcatenation|true
+detectorSuperfluousInstanceOf=SuperfluousInstanceOf|true
+detectorSuspiciousThreadInterrupted=SuspiciousThreadInterrupted|true
+detectorSwitchFallthrough=SwitchFallthrough|true
+detectorSynchronizeAndNullCheckField=SynchronizeAndNullCheckField|true
+detectorSynchronizeOnClassLiteralNotGetClass=SynchronizeOnClassLiteralNotGetClass|true
+detectorSynchronizingOnContentsOfFieldToProtectField=SynchronizingOnContentsOfFieldToProtectField|true
+detectorURLProblems=URLProblems|true
+detectorUncallableMethodOfAnonymousClass=UncallableMethodOfAnonymousClass|true
+detectorUnnecessaryMath=UnnecessaryMath|true
+detectorUnreadFields=UnreadFields|true
+detectorUselessSubclassMethod=UselessSubclassMethod|false
+detectorVarArgsProblems=VarArgsProblems|true
+detectorVolatileUsage=VolatileUsage|true
+detectorWaitInLoop=WaitInLoop|true
+detectorWrongMapIterator=WrongMapIterator|true
+detectorXMLFactoryBypass=XMLFactoryBypass|true
+detector_threshold=2
+effort=default
+filter_settings=Medium|BAD_PRACTICE,CORRECTNESS,MT_CORRECTNESS,PERFORMANCE,STYLE|false|15
+filter_settings_neg=MALICIOUS_CODE,NOISE,I18N,SECURITY,EXPERIMENTAL|
+run_at_full_build=false

.settings/org.apache.ivyde.eclipse.prefs

@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
+org.apache.ivyde.eclipse.standaloneretrieve=<?xml version\="1.0" encoding\="UTF-8" standalone\="no"?><setuplist/>