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Pull requests: nf-core/tools

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Pull requests list

fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
Modules: Have component_files_identical check for new optional files in modules
#2816 opened Feb 29, 2024 by asp8200 Loading…
4 tasks
19
WIP: MultiQC table of all parameters WIP Work in progress
#1389 opened Jan 31, 2022 by ewels • Draft
1 of 4 tasks
13
feat: Install subworkflows with modules from different remotes enhancement
#3083 opened Jul 29, 2024 by jvfe Loading…
2 of 4 tasks
3.1
@jvfe
24
[create] Option to set branch names command line tools Anything to do with the cli interfaces
#1961 opened Oct 20, 2022 by fabianegli Loading…
2 of 4 tasks
6
Add a multi-cloud test profile
#2544 opened Nov 28, 2023 by abhi18av • Draft
2 of 4 tasks
@abhi18av
22
Add nf-prov
#2455 opened Sep 29, 2023 by maxulysse Loading…
4 tasks
13
Allow nf-core download -r to download commits awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. download nf-core download Stale
#2906 opened Apr 4, 2024 by fellen31 • Draft
4 tasks
5
POC: module yaml restructure WIP Work in progress
#2789 opened Feb 23, 2024 by ewels • Draft
8 tasks
1
4
Use more pytest fixtures in modules tests WIP Work in progress
#2226 opened Mar 29, 2023 by fabianegli Loading…
1 of 4 tasks
9
Vscode settings
#3192 opened Oct 4, 2024 by ewels Loading… 3.1
3
added patch command for subworkflows
#2861 opened Mar 18, 2024 by ctuni Loading…
1
3
Container cache download download nf-core download WIP Work in progress
#3163 opened Sep 7, 2024 by muffato • Draft
1 of 4 tasks
3.1
2
@muffato
10
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
2
nf-core modules list works on pipeline repos as well as module repos
#2418 opened Sep 11, 2023 by adamrtalbot Loading…
2 of 4 tasks
3
Add Refgenie config file to pipeline template and CI testing that file is not manually changed. template nf-core pipeline/component template WIP Work in progress
#2139 opened Dec 22, 2022 by mirpedrol • Draft
1 of 4 tasks
1
2
Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog]
#3240 opened Oct 23, 2024 by mashehu Loading…
1
allow mixed str and dict in lint config WIP Work in progress
#3228 opened Oct 17, 2024 by mashehu Loading…
8
Allow main as default channel
#3142 opened Aug 27, 2024 by mashehu Loading…
1
1
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller • Draft
@edmundmiller
1
Plugin to view .nextflow.log files using toolong WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
1
Add nf-core configs create sub command
#2852 opened Mar 18, 2024 by jfy133 • Draft
4 tasks
1
1
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