Extend paraphase configuration #1860
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3 tasks
mashehu
approved these changes
Feb 8, 2026
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This PR extends paraphase's configuration with a new genomic region (taken from PacBio's paraphase config).
Rationale:
Paraphase's test-dataset provides a BAM file which holds no reads in this newly-added genomic region.
When paraphase analyzes a genomic region with no reads, it produces no output vcf/vcf-index files.
By extending the above configuration with this genomic region, we can therefore verify that paraphase's ouput vcf/vcf-index files are indeed optional.