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Implement automatic sharding for nf-test #1810

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merged 31 commits into from
Feb 26, 2025
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maxulysse
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@maxulysse maxulysse commented Feb 25, 2025

closes #1811

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@maxulysse maxulysse changed the title Implement sharding for nf-test Implement automatic sharding for nf-test Feb 25, 2025
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@maxulysse maxulysse mentioned this pull request Feb 25, 2025
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kubranarci
kubranarci previously approved these changes Feb 26, 2025
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This seems interesting, I will cheat for my pipeline 👯

kubranarci
kubranarci previously approved these changes Feb 26, 2025
kubranarci
kubranarci previously approved these changes Feb 26, 2025
kubranarci
kubranarci previously approved these changes Feb 26, 2025
kubranarci
kubranarci previously approved these changes Feb 26, 2025
@maxulysse maxulysse merged commit 61e7e9e into nf-core:dev Feb 26, 2025
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@maxulysse maxulysse deleted the gha_nf-test branch February 26, 2025 12:25
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3 participants