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FEAT: Release Canditate 3.3.2 #1264

Merged
merged 43 commits into from
Oct 4, 2023
Merged

FEAT: Release Canditate 3.3.2 #1264

merged 43 commits into from
Oct 4, 2023

Commits on Sep 18, 2023

  1. back to dev

    @FriederikeHanssen
    FriederikeHanssen committed Sep 18, 2023
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  2. Merge pull request #1246 from FriederikeHanssen/backtodev 

    back to dev
    @FriederikeHanssen
    FriederikeHanssen authored Sep 18, 2023
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  3. fix result path

    @FriederikeHanssen
    FriederikeHanssen committed Sep 18, 2023
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  4. Merge pull request #1247 from FriederikeHanssen/fix_paths 

    fix result path
    @maxulysse
    maxulysse authored Sep 18, 2023
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Commits on Sep 19, 2023

  1. better docs

    @maxulysse
    maxulysse committed Sep 19, 2023
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  2. more safeguards

    @maxulysse
    maxulysse committed Sep 19, 2023
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Commits on Sep 21, 2023

  1. update WEBSITE

    @maxulysse
    maxulysse committed Sep 21, 2023
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Commits on Sep 26, 2023

  1. Template update for nf-core/tools version 2.10

    @nf-core-bot
    nf-core-bot committed Sep 26, 2023
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  2. Merge branch 'dev' into nf-core-template-merge-2.10

    @maxulysse
    maxulysse committed Sep 26, 2023
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  3. merge leftovers

    @maxulysse
    maxulysse committed Sep 26, 2023
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  4. merge leftovers

    @maxulysse
    maxulysse committed Sep 26, 2023
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  5. typo

    @maxulysse
    maxulysse committed Sep 26, 2023
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  6. fix multiqc linting comments

    @maxulysse
    maxulysse committed Sep 26, 2023
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  7. Merge pull request #1254 from nf-core/nf-core-template-merge-2.10 

    Important! Template update for nf-core/tools v2.10
    @maxulysse
    maxulysse authored Sep 26, 2023
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  8. update CHANGELOG

    @maxulysse
    maxulysse committed Sep 26, 2023
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  9. better docs

    @maxulysse
    maxulysse committed Sep 26, 2023
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  10. update controlfreec modules

    @maxulysse
    maxulysse committed Sep 26, 2023
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  11. update CHANGELOG

    @maxulysse
    maxulysse committed Sep 26, 2023
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  12. Merge pull request #1256 from maxulysse/controlfreec 

    FIX: remove spaces in controlfreec modules
    @maxulysse
    maxulysse authored Sep 26, 2023
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Commits on Sep 27, 2023

  1. better error handling when no cache provided

    @maxulysse
    maxulysse committed Sep 27, 2023
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  2. forgot a case in the if else logic

    @maxulysse
    maxulysse committed Sep 27, 2023
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Commits on Sep 28, 2023

  1. unhide some params

    @maxulysse
    maxulysse committed Sep 28, 2023
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  2. Update docs/usage.md 

    Co-authored-by: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @maxulysse @FriederikeHanssen
    maxulysse and FriederikeHanssen authored Sep 28, 2023
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  3. Apply suggestions from code review

    @maxulysse
    maxulysse authored Sep 28, 2023
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  4. Apply suggestions from code review

    @maxulysse
    maxulysse authored Sep 28, 2023
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  5. point towards correct docs

    @maxulysse
    maxulysse committed Sep 28, 2023
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  6. Merge pull request #1248 from maxulysse/annotation_cache_docs 

    FEAT: Improve documentation for annotation cache
    @maxulysse
    maxulysse authored Sep 28, 2023
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Commits on Sep 29, 2023

  1. add nf-prov

    @maxulysse
    maxulysse committed Sep 29, 2023
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  2. update CHANGELOG

    @maxulysse
    maxulysse committed Sep 29, 2023
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  3. add merge to cache checks

    @maxulysse
    maxulysse committed Sep 29, 2023
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  4. Merge pull request #1259 from maxulysse/nf-prov 

    Add nf-prov
    @maxulysse
    maxulysse authored Sep 29, 2023
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  5. split was useful

    @maxulysse
    maxulysse committed Sep 29, 2023
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  6. Update CHANGELOG.md 

    Co-authored-by: Friederike Hanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
    @maxulysse @FriederikeHanssen
    maxulysse and FriederikeHanssen authored Sep 29, 2023
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  7. Merge pull request #1261 from maxulysse/annotation_merge 

    FEAT: add merge to cache checks
    @maxulysse
    maxulysse authored Sep 29, 2023
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  8. FEAT: prepare RC 3.3.2

    @maxulysse
    maxulysse committed Sep 29, 2023
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  9. prettier

    @maxulysse
    maxulysse committed Sep 29, 2023
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  10. Merge pull request #1262 from maxulysse/prepare-rc-3_3_2 

    FEAT: prepare RC 3.3.2
    @FriederikeHanssen
    FriederikeHanssen authored Sep 29, 2023
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  11. Apply suggestions from code review

    @maxulysse
    maxulysse authored Sep 29, 2023
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Commits on Oct 1, 2023

  1. Apply suggestions from code review

    @maxulysse
    maxulysse authored Oct 1, 2023
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Commits on Oct 4, 2023

  1. revert controlfreec-assesssignificance

    @maxulysse
    maxulysse committed Oct 4, 2023
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  2. update CHANGELOG

    @maxulysse
    maxulysse committed Oct 4, 2023
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  3. update dependencies table

    @maxulysse
    maxulysse committed Oct 4, 2023
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  4. Merge pull request #1270 from maxulysse/asses_significance 

    FIX: revert controlfreec-assesssignificance
    @maxulysse
    maxulysse authored Oct 4, 2023
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