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CHORES: Prepare 3.3 #1198

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merged 6 commits into from
Aug 30, 2023
Merged

CHORES: Prepare 3.3 #1198

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98abb4c
prepare release 3.3
maxulysse Aug 30, 2023
db908ef
fix URLs
maxulysse Aug 30, 2023
a026a7c
improve URL
maxulysse Aug 30, 2023
ea9a8b3
remove multiqc_yml from lint
maxulysse Aug 30, 2023
d66db5b
release is 3.3.0
maxulysse Aug 30, 2023
fd19102
release is 3.3.0
maxulysse Aug 30, 2023
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release is 3.3.0
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@maxulysse
maxulysse committed Aug 30, 2023
commit d66db5b69dcb63898cceb0bae683ff31cf7ea62e
2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -5,7 +5,7 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [3.3](https://github.com/nf-core/sarek/releases/tag/3.3) - Rapaselet
## [3.3.0](https://github.com/nf-core/sarek/releases/tag/3.3.0) - Rapaselet

Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe massif (formerly written Piellorieppe) and the Skårki massif.

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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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Expand Up @@ -3,9 +3,9 @@ custom_logo_url: https://github.com/nf-core/sarek/
custom_logo_title: "nf-core/sarek"

report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/sarek/releases/tag/3.3" target="_blank">nf-core/sarek</a>
This report has been generated by the <a href="https://github.com/nf-core/sarek/releases/tag/3.3.0" target="_blank">nf-core/sarek</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/sarek/3.3/docs/output/" target="_blank">documentation</a>.
<a href="https://nf-co.re/sarek/3.3.0/docs/output/" target="_blank">documentation</a>.
report_section_order:
"nf-core-sarek-methods-description":
order: -1000
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9 changes: 1 addition & 8 deletions nextflow.config
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Expand Up @@ -311,13 +311,6 @@ env {
// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']

// Set default registry for Docker, Singularity and Podman independent of -profile
// Will not be used unless Docker, Singularity and Podman are enabled
// Set to your registry if you have a mirror of containers
docker.registry = 'quay.io'
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podman.registry = 'quay.io'
singularity.registry = 'quay.io'

def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
timeline {
enabled = true
Expand All @@ -343,7 +336,7 @@ manifest {
description = """An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '3.3'
version = '3.3.0'
doi = '10.12688/f1000research.16665.2, 10.5281/zenodo.4063683'
}

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