Add pattern for all reference files

### Description of feature

We don't have patterns for most of the reference files, and that is a source of issue and confusion:

https://github.com/nf-core/sarek/blob/5cc30494a6b8e7e53be64d308b582190ca7d2585/nextflow_schema.json#L674-L679

	"fasta_fai": {
	"type": "string",
	"fa_icon": "fas fa-file",
	"help_text": "If you use AWS iGenomes, this has already been set for you appropriately.\n\n> NB If none provided, will be generated automatically from the FASTA reference. Combine with `--save_reference` to save for future runs.",
	"description": "Path to FASTA reference index."
	},

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Add pattern for all reference files #1650

maxulysse
openedon Sep 12, 2024

Description of feature

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