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Description
openedon Aug 1, 2024
Description of feature
This time I tried to look through issues and code. ;)
As far as I can see, sarek does not do any kind of variant decomposition, which (if coupled with normalization) can simplify processing of the produced VCF file by downstream tools, prior to annotation. "bcbio" back in the day did this, although if this is implemented in sarek, it should be definitely optional and turned off by default.
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