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Copy-Number Enhancements - Ascat penality #1510

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Hi there.
I think Sarek is in a good place with the current ASCAT implementation, but I'd like to point towards two things that I think would be helpful for the community.

  • The function ascat.aspcf() (found in the ascat module) accepts a parameter penalty which controls the sensitivity of the tool to potential segment breakpoints. The default is 70 which is usually fine, but for individuals using panel/wes data being able to change this value might be helpful - any chance of exposing this as a param?

Kind regards,
George

EDIT by @maxulysse - created #1512

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