update docs freebayes

nf-core · Apr 9, 2020 · fb52728 · fb52728
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diff --git a/docs/images/sarek_workflow.png b/docs/images/sarek_workflow.png
diff --git a/docs/output.md b/docs/output.md
@@ -147,10 +147,10 @@ Recalibrated BAM files can also be used as an input to start the Variant Calling
 
 For further reading and documentation see the [FreeBayes manual](https://github.com/ekg/freebayes/blob/master/README.md#user-manual-and-guide).
 
-For a Tumor/Normal pair only:
-**Output directory: `results/VariantCalling/[TUMOR_vs_NORMAL]/FreeBayes`**
+For all samples:
+**Output directory: `results/VariantCalling/[SAMPLE]/FreeBayes`**
 
-- `FreeBayes_[TUMORSAMPLE]_vs_[NORMALSAMPLE].vcf.gz` and `FreeBayes_[TUMORSAMPLE]_vs_[NORMALSAMPLE].vcf.gz.tbi`
+- `FreeBayes_[SAMPLE].vcf.gz` and `FreeBayes_[SAMPLE].vcf.gz.tbi`
   - VCF with Tabix index
 
 #### GATK HaplotypeCaller

diff --git a/docs/variant_calling.md b/docs/variant_calling.md
@@ -11,6 +11,7 @@ You can specify the variant caller to use with the `--tools` parameter (see [usa
 
 Germline variant calling can currently only be performed with the following variant callers:
 
+- FreeBayes
 - HaplotypeCaller
 - Manta
 - mpileup