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* Add workflow figure
* Include workflow figure in readme
* Update CHANGELOG
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maxulysse authored Oct 11, 2019
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3 changes: 2 additions & 1 deletion .github/markdownlint.yml
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siblings_only: true
no-inline-html:
allowed_elements:
- img
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `qualimap` from `2.2.2b` to `2.2.2c`
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `tiddit` from `2.7.1` to `2.8.0`
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `vcfanno` from `0.3.1` to `0.3.2`
- [#45](https://github.com/nf-core/sarek/pull/45) - Include Workflow figure in `README.md`

### `Fixed`

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7 changes: 5 additions & 2 deletions README.md
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Expand Up @@ -15,10 +15,9 @@

[![Join us on Slack](https://img.shields.io/badge/slack-nfcore/sarek-blue.svg)](https://nfcore.slack.com/messages/CGFUX04HZ/)


## Introduction

<img align="right" title="CAW" src="/docs/images/CAW_logo.png">
<img align="right" title="CAW" src="./docs/images/CAW_logo.png">

Previously known as the Cancer Analysis Workflow (CAW),
Sarek is a workflow designed to run analyses on whole genome or targeted sequencing data from regular samples or tumour / normal pairs and could include additional relapses.
Expand All @@ -29,6 +28,10 @@ across multiple compute infrastructures in a very portable manner.
Software dependencies are handled using [Conda](https://conda.io/), [Docker](https://www.docker.com) or [Singularity](https://www.sylabs.io/singularity/) - environment/container technologies that provide excellent reproducibility and ease of use.
Thus making installation trivial and results highly reproducible.

<p align="center">
<img title="Sarek Workflow" src="./docs/images/sarek_workflow.png">
</p>

It's listed on the [Elixir - Tools and Data Services Registry](https://bio.tools/Sarek), [Dockstore](https://dockstore.org/workflows/github.com/nf-core/sarek) and [omicX - Bioinformatics tools](https://omictools.com/sarek-tool).

## Documentation
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Binary file added docs/images/sarek_workflow.png
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