release is 3.3.0

CHANGELOG.md

@@ -5,7 +5,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [3.3](https://github.com/nf-core/sarek/releases/tag/3.3) - Rapaselet
+## [3.3.0](https://github.com/nf-core/sarek/releases/tag/3.3.0) - Rapaselet
 
 Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe massif (formerly written Piellorieppe) and the Skårki massif.
 

assets/multiqc_config.yml

@@ -3,9 +3,9 @@ custom_logo_url: https://github.com/nf-core/sarek/
 custom_logo_title: "nf-core/sarek"
 
 report_comment: >
-  This report has been generated by the <a href="/nf-core/sarek/releases/tag/3.3" target="_blank">nf-core/sarek</a>
+  This report has been generated by the <a href="/nf-core/sarek/releases/tag/3.3.0" target="_blank">nf-core/sarek</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/sarek/3.3/docs/output/" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/sarek/3.3.0/docs/output/" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-sarek-methods-description":
     order: -1000

nextflow.config

@@ -311,13 +311,6 @@ env {
 // Capture exit codes from upstream processes when piping
 process.shell = ['/bin/bash', '-euo', 'pipefail']
 
-// Set default registry for Docker, Singularity and Podman independent of -profile
-// Will not be used unless Docker, Singularity and Podman are enabled
-// Set to your registry if you have a mirror of containers
-docker.registry      = 'quay.io'
-podman.registry      = 'quay.io'
-singularity.registry = 'quay.io'
-
 def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
 timeline {
     enabled = true
@@ -343,7 +336,7 @@ manifest {
     description     = """An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '3.3'
+    version         = '3.3.0'
     doi             = '10.12688/f1000research.16665.2, 10.5281/zenodo.4063683'
 }